RNA id: AMCG00016386


Basic Information

Item Value
RNA id AMCG00016386
length 2472
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00016386
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17686856 ~ 17691260 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGCCTGGAACCGGAAGCCCTTGCACGGAGCGATGTGACTGATGATGATGTATCGGAGAAATTCCTTCTACATAACAGTCCGATACCTTGAGTATCAGAGAGAGTGGATTTGCGAGTAGGCGTAGCTTCCCTTCATACCTTAGGCCTACAGCTCTCCCCGCCTGCCTGAGCCCTGCGCTCGCGCTCCTAACCCCAGTCACCACAGGCTAGGTTGCTTTTAAAACGCCAAGCTGGATTTCCTTCAGATGAAGCAGCTGAAAcgcaaaagaaaaagcaactaTAGCGTGAAGGAAACGCAGACCCTAATCAGGGAGATCCGGAAACGCAAGGACATACTCTTCTccaaacagcagaacacagccATCAATGAGCTGAAGAGGAGGGCGTGGGATGAGGTGGCCGATTGCGTGAATGCCCTTGGAGAAGGAGAGCTGAGGACCGCTGTGGAAGTGAAGAGACGATACCTGGACTGGAGGGCGTTGATGAAAAGGAAGCAGATTAGGGCCGAACTATCTGACATCAAAAACGAGTATAATCCGTCATCTCCAGACATCGATAACTCGCTCAGTGGGGACCAGAGTGTAGACTTGAGTGGGTTTCCAAAGGAATCCAACTGCGACTGGCAAGACCTCTCTGATCTGGGAGAGCCCAGCAGCCACAATTCGTCAGGAATCAAGATGGAAGATGATGACCCCAATAATTACAGGCTCGAGagcggagagggagagggagagggcgaCGGAGAAGAGGAAGACGAGGATGACTGCTTCCCTTCCATCCTGCCGGAAGTGGACAGGGAAGGCAGGGTGCCGGAGGTGTTTGCTCACATCGATGAGTTCGGCATGCTGAGTGCCACCAAGGCCACCTCCAGGGAACCGGGCGGGGGCGGAGGAGGAGGCGCGGACGGCACGGGCCTCCTGATCGCGCTGGAGAAGCAGCGGTTGGACCTGGAGAAGCACCGCCTCAACGTGGAGACGGAGCGGCTGCAGGTGGAGAAGGAGCGGCTGCAGATCGAGAAGGACAAGCTGCGGCGCGTCGACATCGAGCACGAGCGGCTGCAGATGGAGAAGGAGCGGCTGCAGATCGAGAGGGAGCGGCTGCGGCTGCTCATGTTCCAGGCCGAGCGGCCCACCATGGACTGCGAGCTGTCGCAGAAGGACAGGAAGCCCTGGCAGCCGGTGGACCTGGAGTCGGAGCGCCTGAAGCTGGAGAAGGAGCGCCTGCAGCTGGAGAAGGAGCGCCTGCAGTTCTTCAAGTTCGAGTCGGGGCGGCTGCAGATCGAGAAGGAGCGGTTTCAGGTGGAGAAGGAGAGGCTGCAGCTCCACAAGGATGGACAGCAGATGGCTCTTCACCAGCCACACTAGACCTACTCGGATCGCTCGCTAaagttgtgctttttaaaaccgTTTTCTGAATTTTTACTGGCCGATTTCTTAAGTTGTGCTGTGCAATGACTTTGAAAAAGggacttgtttttttcctaacGGATGTGTTCAGTATAACTGTGTTTAGGAGTTCATGCTTTGTGTGACACTttcctcatttgtttttctttttaggaaCACTAGAGATGCAGTATATTATCAGAATATTCCATgaataaatgcaataataaacatCAGTGTTGACCGGTATTCAGTTCCCAAAACGATCAACAGAAAAATCGATTGACAGTAATTGTGTCCATAGTCTCCCCATTTCACGAGAAGTTGAAGTAAagaaatacaagtattttataGTCATTAGTGACTGTGAATGTAATGTTGTATCTGAGGAGTTTCTTTTCAGAAACCCTCAGTACTGTATGTGATCTATAGGAGAATCGTTGCCTAATGTATGTATCAAGCACAACTCGATggtgggaagaaaaaaaatgctcgTGAAGCAAGACCTCTTAGTATTGGTGTGAATAAAAGCgtaaacgttttattttttatctgcaCTGTTACATGATGTTCAgtcctttcatttttttggaCATTTGTAGAGTCACAGAGAACATCCCTTgttacaaaaaagtatttgaaggTTAAAAACTTAATGTGCTTGTACCTCCATGCCTACTTCTTTCATcacaaagaataaaagtaaCGTGCTGAGTTTGACAATCTGATGTGTTATAAACCGAAGGGGTTAACTTTCAGTTTGACCGGAGTCAGTCTCTGTAAGActtgtttttagtttgaaatcaaataaatcttCAGAACCAGTGTTATAGCACTGCAATGATATTACACGGTTCACTGAGACGATTGTCTTTGACCACATGGTGCAACTCCTGACTGCTTAGAAAAAGACCATAACACTTCTTATAGCAGTACTCATTCTTTTTATGACTTTGTACAAGAAAAGACTGGGCTGTTGTTGCTCAGTTGGCCTAGTTCATCAAATACTTTCAAATAAGATCGAGTTTCTGAtgtataagaaaaacaaatatcattCCACAACACTGCAGCTGGTTAATAACTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16327 lncRNA upstream 5947 17658757 ~ 17680909 (+) False G13174
TU16325 lncRNA upstream 5947 17678127 ~ 17680909 (+) True G13174
TU16326 lncRNA upstream 5947 17678127 ~ 17680909 (+) False G13174
TU16296 lncRNA upstream 87275 17597350 ~ 17599581 (+) False AMCG00016379
TU16123 lncRNA upstream 539858 17143610 ~ 17146998 (+) True G13021
TU16441 lncRNA downstream 568008 18259268 ~ 18259834 (+) False G13266
TU16438 lncRNA downstream 568281 18259541 ~ 18262343 (+) True G13266
TU16442 lncRNA downstream 573942 18265202 ~ 18265406 (+) True G13267
TU16445 lncRNA downstream 578773 18270033 ~ 18274439 (+) True G13270
TU16448 lncRNA downstream 596780 18288040 ~ 18288261 (+) True G13273
AMCG00016377 mRNA upstream 48436 17624138 ~ 17638420 (+) True AMCG00016377
AMCG00016380 mRNA upstream 75696 17603723 ~ 17611160 (+) True AMCG00016380
AMCG00016379 mRNA upstream 87277 17562418 ~ 17599579 (+) True AMCG00016379
AMCG00016378 mRNA upstream 127057 17538087 ~ 17559799 (+) True AMCG00016378
AMCG00016372 mRNA upstream 154492 17528571 ~ 17532364 (+) True AMCG00016372
AMCG00016387 mRNA downstream 184184 17875444 ~ 17887736 (+) True AMCG00016387
AMCG00016388 mRNA downstream 390662 18081922 ~ 18085103 (+) True AMCG00016388
AMCG00016394 mRNA downstream 406751 18098011 ~ 18100803 (+) True AMCG00016394
AMCG00016393 mRNA downstream 466447 18157707 ~ 18165129 (+) True AMCG00016393
AMCG00016397 mRNA downstream 673478 18364738 ~ 18370387 (+) True AMCG00016397
TU16114 other upstream 564924 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 1200853 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 1200853 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 1201708 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 3248250 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 6388757 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 6843758 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 7316702 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 7441938 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 7459223 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile