RNA id: AMCG00016388



Basic Information


Item Value
RNA id AMCG00016388
length 528
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00016388
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18081922 ~ 18085103 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTTTTTCTGTAGATGGGGATTTCACGTAAGgaGTACACTCATCTACCTGTATACGCTGTTGCACTCAGTGAGTGCAGGTAACTACAGCCAACCCAAAGTGGTCGTGGTGAGGAACAACAGTGGGAGAAGCTCAGACACTAGCTGCACAGTTAAGATTCACTGTTTCTCATCAGGTGGCTACCCCCAAAAAATGGTTAAGTGGAATTTTACCAAAGAGCTGAATATATCCTTACGGATCACAGAAGTGAACAAGAGCGCCGAGCAGGATCCAGGCAATGGGCTTTTTAATATTTCCAGCACAATCTTCGTGAACAGCTCTGGAGCTTTCAACGTTAGCTGCTCTGTGGGGGAGGAGACTTCAAAAGAAATTGAAGTTTGTGTTGATAATCCAGACCCAAAGCTACCAGCAGAGTTTGACCCCACCCAAAATATTGCTTTTGGAGTGATATTAATCCTAATCAGCATTGTATTGCTCTGTCTTcttataaagaaaattaaagCAACTTCAGAGGAACATCAAGAGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU16327 lncRNA upstream 401013 17658757 ~ 17680909 (+) False G13174
TU16325 lncRNA upstream 401013 17678127 ~ 17680909 (+) True G13174
TU16326 lncRNA upstream 401013 17678127 ~ 17680909 (+) False G13174
TU16296 lncRNA upstream 482341 17597350 ~ 17599581 (+) False AMCG00016379
TU16123 lncRNA upstream 934924 17143610 ~ 17146998 (+) True G13021
TU16441 lncRNA downstream 174165 18259268 ~ 18259834 (+) False G13266
TU16438 lncRNA downstream 174438 18259541 ~ 18262343 (+) True G13266
TU16442 lncRNA downstream 180099 18265202 ~ 18265406 (+) True G13267
TU16445 lncRNA downstream 184930 18270033 ~ 18274439 (+) True G13270
TU16448 lncRNA downstream 202937 18288040 ~ 18288261 (+) True G13273
AMCG00016387 mRNA upstream 194186 17875444 ~ 17887736 (+) True AMCG00016387
AMCG00016386 mRNA upstream 390662 17686856 ~ 17691260 (+) True AMCG00016386
AMCG00016377 mRNA upstream 443502 17624138 ~ 17638420 (+) True AMCG00016377
AMCG00016380 mRNA upstream 470762 17603723 ~ 17611160 (+) True AMCG00016380
AMCG00016379 mRNA upstream 482343 17562418 ~ 17599579 (+) True AMCG00016379
AMCG00016394 mRNA downstream 12908 18098011 ~ 18100803 (+) True AMCG00016394
AMCG00016393 mRNA downstream 72604 18157707 ~ 18165129 (+) True AMCG00016393
AMCG00016397 mRNA downstream 279635 18364738 ~ 18370387 (+) True AMCG00016397
AMCG00016407 mRNA downstream 333914 18419017 ~ 18429096 (+) True AMCG00016407
AMCG00016411 mRNA downstream 543325 18628428 ~ 18635806 (+) True AMCG00016411
TU16114 other upstream 959990 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 1595919 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 1595919 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 1596774 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 3643316 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 5994914 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 6449915 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 6922859 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 7048095 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 7065380 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile