RNA id: AMCG00016390


Basic Information

Item Value
RNA id AMCG00016390
length 558
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00016390
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17935136 ~ 17948136 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCCACTGAGTTGGCAGAACAAATGGGAAGGCCCAGAAGATCCCATGCTGTACCTCAGAGCAGTGGTGGCTCGAGCACTTGCTATACAGAGCTGGGTTGATAGGTCAGAGAAACAGAGCCTCCTCTCAGACACGCTCGACCTGTCTGAACTCTTCCACCCGGACACCTTCCTCAATGCACTCAGACAGGAGACTGCAAGATCAATGGGCTGCTCAATGGACAGTCTGAGGTTCATAGCATCTTGGAAAAGCAAAATTGCAGAGGCCAAGCTCCAAGTCAAGATTGGTGGCTTGAAACTGGAAGGGTGCAGTTTTGACGGAAACCGGCTTTCAGAGAACCAGCATGACTCTCCCAGCGTGTCGGCAGTGCCCTCTTGTTATATGGCCTGGATTCCTCAGGGTGCCAGTGGGTCTCACCCTGCTGAAGAGAGCATTTCTCTGCCCGTGTACACCAGTGCTGAGAGAGCGCGCGTGGTGACCAACATCGACGTGCCTTGTGGCGGGAGCCCGGACCAGTGGATCCAGAGTGGGGCGGCTCTGTTTCTAAAGCAGCAGTAG

Function

GO:

id name namespace
GO:0001539 cilium or flagellum-dependent cell motility biological_process
GO:0007018 microtubule-based movement biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0030031 cell projection assembly biological_process
GO:0030286 dynein complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16302 lncRNA downstream 394791 17538034 ~ 17540345 (-) False AMCG00016376
TU16264 lncRNA downstream 438789 17495923 ~ 17496347 (-) True G13129
TU16261 lncRNA downstream 440790 17493855 ~ 17494346 (-) True G13126
TU16213 lncRNA downstream 557597 17375266 ~ 17377539 (-) True G13091
TU16181 lncRNA downstream 648307 17284403 ~ 17286829 (-) True G13065
TU16425 lncRNA upstream 214651 18162787 ~ 18165770 (-) True G13254
TU16520 lncRNA upstream 878058 18826194 ~ 18901976 (-) True G13334
TU16525 lncRNA upstream 1110269 19058405 ~ 19058673 (-) True G13339
TU16528 lncRNA upstream 1129232 19077368 ~ 19077823 (-) True G13341
TU16555 lncRNA upstream 1140088 19088224 ~ 19088632 (-) True G13366
AMCG00016382 mRNA downstream 148041 17785858 ~ 17787095 (-) True AMCG00016382
AMCG00016383 mRNA downstream 186386 17740632 ~ 17748750 (-) True AMCG00016383
AMCG00016385 mRNA downstream 218153 17715768 ~ 17716983 (-) True AMCG00016385
AMCG00016384 mRNA downstream 230751 17696929 ~ 17704385 (-) True AMCG00016384
AMCG00016381 mRNA downstream 248399 17678130 ~ 17686737 (-) True AMCG00016381
AMCG00016389 mRNA upstream 37295 17985431 ~ 18004633 (-) True AMCG00016389
AMCG00016391 mRNA upstream 71903 18020039 ~ 18069565 (-) True AMCG00016391
AMCG00016392 mRNA upstream 138631 18086767 ~ 18091557 (-) True AMCG00016392
AMCG00016395 mRNA upstream 280975 18229111 ~ 18242329 (-) True AMCG00016395
AMCG00016396 mRNA upstream 311024 18259160 ~ 18262198 (-) True AMCG00016396
TU16024 other downstream 1073957 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 1073957 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 1073957 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 3143167 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 4375952 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 1143103 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 2187061 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 5506956 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 5751013 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 6362901 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile