RNA id: AMCG00016392


Basic Information

Item Value
RNA id AMCG00016392
length 3400
RNA type mRNA
GC content 0.48
exon number 2
gene id AMCG00016392
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18086767 ~ 18091557 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTACCGAACTGGCTGCAGGGGCGACTCAGTGACCGCAGAGGCAGCGCAGTCCGTCCCGCAGCAGTCAGACCCGCATCTGCGGACTTCCCCGcacagcgcagcgcagcgcagcgcgGCATTTGCACGGAGCCTTTCTCTTGATCTTCATCCAGGACGGTTTGCACACTCAGTCCGCTTCCAGGTGTTGACCGCCGCCGTGGGGCTCCGAGGCGAGGCGAGGCGAGGCGAGGCGCGCCGGGCTGCACCGGGACTGTGGACTGGGCGGTCGGCTGCTTGACACCAGCAAGGTACCATGCGTTGGATTTCGCTCCTGGATATGGTGGTGTTTTCCTTGACCATCTTTTCCCACCCCCTGGGGTCAGCCCAGGGGTTTGGGGACGAGGAAGAAGTACAGTGTGACCCCATCCGGATTTCCATGTGCCAGGATCTGGGATACAATGTTACAAAGATGCCCAACTTGGTGGGCAACGTGCTGCAGTCGGACGCGGAGCTCCAACTGACAACTTTTACCCCTCTTATCCAATACGGGTGTTCAAGCCAGCTTAAGTTTTTTCTGTGCTCAGTCTATGTGCCCATGTGCACCGACAAGGTCAACATCCCTATCGGGCCCTGTGGCAGCATGTGCCTTTCAGTCAAGCGTAAATGTCTGCCTGTCTTGACGGAGTTTGGCTTTGTGTGGCCCGAGCCCCTCAACTGCAGCCTCTTCCCACCTCAGAACGACCAAAACCACATGTGCATGGAGGGGCCTGGAGACGAGGAGGCCCCGTACCACACCATCAAGACCTTGCAGCCCTTGGAGGAGGAATGCCATACCCGGGTGAAAAACTCTGACCAGTACATCTGGGTCAAAAGGAGTATGAACTGTGTCTTAAAGTGTGGCTATGATTCAGGTCTCTACGGAAGACCGGCCAAGGTGTTCACCGACATCTGGATGGCTGCCTGGGCCATCCTGTGCTTTGTGTCGACCACCTTCACCGTCCTCACTTTCCTCATCGACTCCTCTCGGTTCTCCTACCCGGAGCGGCCCATCATCTTTCTGAGCATGTGCTACAATATTTATAGCATTGCTTACATTGTGCGGCTGACGGTCGGGAGGGAGAGGATATCCTGTGATTTTGAGGAGGCAGCCGAGCCCGTGCTCATCCAAGAAGGGCTGAAAAACACCGGATGTGCCATCGTTTTCCTGCTCATGTACTTCTTTGGGATGGCCAGCTCCATCTGGTGGGTGATCCTGACGCTGACGTGGTTCCTGGCAGCGGGACTCAAGTGGGGGCACGAGGCCATCGAGATGCACAGTTCCTACTTTCATATTGCGGCCTGGGCCATCCCAGCCGTGAAGACCATTGTGATTTTAATCATGCGGCTAGTGGATGCCGATGACCTGACTGGCCTGTGCTACGTTGGGAACCAGCACATCGATGCCCTCACAGGGTTTGTGGTGGCGCCTTTGTTCACCTACCTGGTGATCGGGACCCTTTTCATAGCCGCCGGCTTAGTGGCTCTGTTCAAAATCCGGTCCAACCTGCAGAAGGATGGAACTAAAACGGACAAACTGGAACGGCTCATGGTCAAGATTGGCGTGTTTTCCGTGCTGTACACCGTGCCGGCCACCTGCGTCATAGCATGTTACTTCTACGAGATTTCCAATTGGAGTGATTTCAAGCACACGGCAGATCACTCCTACATGGCCGTGGAAATGTTGAAGATGTTCATGTCTCTGCTGGTAGGAATCACCTCGGGCATGTGGATCTGGTCTGCCAAGACCTTGCACACGTGGCAGAAATGCTCAAACAGGCTGGTGAGCTCTGGGAGGACAAAACGTGAGAAAAGGGCAGACGGCTGGATTAAGCCGGTAAAGGGAAATGAGACGGTGGTGTGAAGCCATGATGCCAGGGACAGCCTTTTTTGTATAGGGCTTGAAAAAGCAACCTCGTAACCTGAGTAGGTTAACTCGACATGGGTTGGCCCATTCAGTTGCTGGAAGAGGGAGACGCAGCAGAGGACTCTGAGCACAGACATAGCGCATCGTACAAGCTGCCGTAAAGAGCAGAGCAGTTGTCCATGAATGGTACCTTAACCGTAATCTTCAGTGGGTGTGATGGCTTGTGTCGCTTAACCAAAAACTGAGCTGATTTCACAGTGTGTCTTGATTTTTCCTTCATCACGTCAAAGTTAATGTAGCTGTGCATCATGCTGTGAAGGACTGGTGCAGTCCTATTTGCAAATGGCCATCAGAAGCTCGTTCAGGGTGTTTAACAGTGTATTGCTGTAACtgtaaatgcagtttatttatgtagcaGTTACAGTATTTGATATGCATTTACACAGAGTTTTTATTAGCCTGTTTTACACTGGACATTTAACAGTGTAGATGTTGTACAAAGGTATGGCATACATACACATTGAAGTGCACTATGGAAAGATTATTGTGAATCTTATTTCTACAGACTCTGGGTTTATGCCTCAGGCACAAGAAGATCTGGGTCAGTGACTGCTGCTTTATTATCTGTGGTATGTCTGAATTCTACTGCAGTATATTTACAGGTTTTATTCAATGAAATCTCCAAGAACAGGAATGGCcactttttatttcaaagaatATGAGTATAACCAGCGTTACAAGGTGTTTTTAGATTTCTGAATTCAGCCTAGTTGTGCTTTTGGCAAATGTCCATTCAACTCCccttttttaaactttgtagGATCTCCTGAATTATACCCATAGCTATTTCATATGTTTAAAGGTAGAATGTTTTACCCCCAAACTTTTTGATATAATTTATCTCTAGACCCCTCGATGGTGTCCTTGTCGTACTTTATAATGGTCGCACAATAATTTCTATTCTGGAAAAAGTTACTCCTCAGTATCTTTCTGAGCAATGTACTGACTCTATGCTGAAGGAATGTCTTCACTGGCACACTGGGTTAAAACACAAGCTGTGTATTATGTCAAACCAAAACTGCAACAGACAATGAAGGTTTTCAACCGAAACATGCGACCAAATTTAGAACTAGTAAAACTGTCCAGTAAAGAAGCCCTCTTGATGAACTTGTCAAAGCTGAATGCTGGGACACCATATCCATGTACAACACGTGTAGGGCCGTTTCCCACTTTCCCTtgaatgtacttttttatttttattttatttttatatttgtgggggagaaaaaaaacattttcatccgtTTTAAGgtgcaacagaaaaaaatgggTACTTACAACACCTAGCCAATTAAGCCAGGATAAAATGAAGtactttgaatattttttttaaacaacatggtttgttattaatgtatttttatatgtttgtgtctgtgtatgtatgtgtatttatatatacatgtatatataatctttgtaattttttaaatttaaatctgcttttgtatcagaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02354 FZD4, fz4, CD344; frizzled 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16302 lncRNA downstream 546422 17538034 ~ 17540345 (-) False AMCG00016376
TU16264 lncRNA downstream 590420 17495923 ~ 17496347 (-) True G13129
TU16261 lncRNA downstream 592421 17493855 ~ 17494346 (-) True G13126
TU16213 lncRNA downstream 709228 17375266 ~ 17377539 (-) True G13091
TU16181 lncRNA downstream 799938 17284403 ~ 17286829 (-) True G13065
TU16425 lncRNA upstream 71230 18162787 ~ 18165770 (-) True G13254
TU16520 lncRNA upstream 734637 18826194 ~ 18901976 (-) True G13334
TU16525 lncRNA upstream 966848 19058405 ~ 19058673 (-) True G13339
TU16528 lncRNA upstream 985811 19077368 ~ 19077823 (-) True G13341
TU16555 lncRNA upstream 996667 19088224 ~ 19088632 (-) True G13366
AMCG00016391 mRNA downstream 17202 18020039 ~ 18069565 (-) True AMCG00016391
AMCG00016389 mRNA downstream 82134 17985431 ~ 18004633 (-) True AMCG00016389
AMCG00016390 mRNA downstream 138631 17935136 ~ 17948136 (-) True AMCG00016390
AMCG00016382 mRNA downstream 299672 17785858 ~ 17787095 (-) True AMCG00016382
AMCG00016383 mRNA downstream 338017 17740632 ~ 17748750 (-) True AMCG00016383
AMCG00016395 mRNA upstream 137554 18229111 ~ 18242329 (-) True AMCG00016395
AMCG00016396 mRNA upstream 167603 18259160 ~ 18262198 (-) True AMCG00016396
AMCG00016398 mRNA upstream 182673 18274230 ~ 18292859 (-) True AMCG00016398
AMCG00016399 mRNA upstream 238636 18330193 ~ 18349377 (-) True AMCG00016399
AMCG00016400 mRNA upstream 288907 18380464 ~ 18399758 (-) True AMCG00016400
TU16024 other downstream 1225588 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 1225588 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 1225588 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 3294798 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 4527583 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 999682 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 2043640 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 5363535 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 5607592 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 6219480 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059547 True 1746 mRNA 0.49 1 NC_007116.7 56026031 ~ 56027776 (+)