RNA id: AMCG00016397


Basic Information

Item Value
RNA id AMCG00016397
length 1608
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00016397
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18364738 ~ 18370387 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGCTGTTTTTAGGTCTTCTGACTGTGTTGCAGCTGGTGCACTTGACACGGCAGCAGTTCCCCCGAGCCTGCGCTACGGCCGCTGCCCTGGTGCCCAAGCAGTGCTGCCCGCTGTGGGAAGGAGACGGCACGGCCTGCGGCGCCCTTTCTGGTAGAGGGTCCTGTCAAGATGTGACCATCATAGACCTCCCCCACGGGCCACAGTTCCCCCACGCCGACCTGGACGACAGAGAAAGGTGGCCCTTGGTCTTTTATAACCGGACCTGCCGGTGTGCGGGCAACTACATGGGCGTGAACTGTGGCGACTGCAAATTTGGCTACTTTGGAGCCAACTGCGCCGAGAGGAGGGAGTCCATCAGGAGGAACATCTTGCAGCTGACACCGGCTGAGAAGAACAAATTCATCTCCTACCTGAACCTGGCCAAGACCACCATCAGCACCCAGTATGTGATCGCTACCGGCACCTACGCCGAGATGAACAACGGCACGACCCCCCTGTTTGCGGACATCAGCGTCTATGACCTGTTCGTGTGGATGCACTACTACTCGTCCCGGGACGCGTTCCTGGGGGGGGCCAACAACGTGTGGACGGCGATTGATTTCGCCCACGAGTCGGCGGGCTTTCTGCCGTGGCACCGGGTGTTCCTGTTGCACTGGGAACATGAGATCAGGAAACTGACTGGGGACTACAACTTCACCATCCCGTACTGGGACTGGAGGGACGCGCCGGGGTGTGAGGTCTGCACTGATGAGTTAATGGGAGCCGGCAATCCCAGCAAGCCAGGCCTCCTAGACCCAGCTTCCATCTTCTCAGCTTGGAAGGTTATGTGCACACAACCAGGGGAGTACAACAGGCTGGAGATACTATGTAACGGGACTTCTGAAGGGCCTATTCAGCGTAACCCTGGTAGCCATGACAGGAGCAGGGTGGCCAGACTGCCCACGTCTGCAGAGGTGGAGTTCTGCTTGAGTCTGACAGAGTATGAAACTGGGCCCATGGACAGGACTGCCAATATGAGCTTCAGAAACGCATTAGAAGGTTTTTCAAATCCTGCCAATGGTATAGCCACCACTTCGCAGAGCAGCATGCATAACTCACTCCATGTGTTCATGAATGGCTCCATGTCTTCAGTACAAGGCTCAGCTAATGATCCAATTTTTATCATCCATCACGCTTTTGTTGACAGcaTCTTTGAGCAGTGGCTGAGGAGACATAATCCTCCCAGAACGGTCTACCCAACTGCCAATGCCCCAATTGGACACAACGATGGCTATTATATGGTGCCATTCATGCCCCTCTTCCGGAATGGAGATTACTTCCTGTCTTCCAAAGAGTTTGGATATACCTATGCCTATATGTTAGATCCAGGACAAAGGTTCCTACAGGAGGTCTTGAACCCTTACCTGGACCAAGCCCAACAAATCTGGAGGTGGCTTGTGGGAGCTGGGATAATCGGGGCTCTGGTGGCAGCAATAGTGGCAGCAGCGATTGCTCTGGTCTGGCGCAGACAGCagaggaagaagagaagaaGGGCTTCTTTTGGCGAGACGCAGCCCCTACTCCAGAGCAGTGAGGAGGACGCCAGTTACCAGACCAACCTGTGA

Function

GO: NA

KEGG:

id description
K00505 TYR; tyrosinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16449 lncRNA upstream 49382 18310528 ~ 18315356 (+) True G13274
TU16448 lncRNA upstream 76477 18288040 ~ 18288261 (+) True G13273
TU16445 lncRNA upstream 90299 18270033 ~ 18274439 (+) True G13270
TU16442 lncRNA upstream 99332 18265202 ~ 18265406 (+) True G13267
TU16438 lncRNA upstream 102395 18259541 ~ 18262343 (+) True G13266
TU16472 lncRNA downstream 48630 18419017 ~ 18473689 (+) False AMCG00016407
TU16508 lncRNA downstream 413061 18783448 ~ 18826531 (+) True G13323
TU16530 lncRNA downstream 720854 19091241 ~ 19105528 (+) True G13342
TU16531 lncRNA downstream 720854 19091241 ~ 19103960 (+) False G13342
TU16553 lncRNA downstream 791195 19161582 ~ 19161812 (+) True G13364
AMCG00016393 mRNA upstream 199609 18157707 ~ 18165129 (+) True AMCG00016393
AMCG00016394 mRNA upstream 263935 18098011 ~ 18100803 (+) True AMCG00016394
AMCG00016388 mRNA upstream 279635 18081922 ~ 18085103 (+) True AMCG00016388
AMCG00016387 mRNA upstream 477002 17875444 ~ 17887736 (+) True AMCG00016387
AMCG00016386 mRNA upstream 673478 17686856 ~ 17691260 (+) True AMCG00016386
AMCG00016407 mRNA downstream 48630 18419017 ~ 18429096 (+) True AMCG00016407
AMCG00016411 mRNA downstream 258041 18628428 ~ 18635806 (+) True AMCG00016411
AMCG00016412 mRNA downstream 292615 18663002 ~ 18663364 (+) True AMCG00016412
AMCG00016405 mRNA downstream 333480 18703867 ~ 18762647 (+) True AMCG00016405
AMCG00016408 mRNA downstream 421536 18791923 ~ 19090628 (+) True AMCG00016408
TU16114 other upstream 1242806 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 1878735 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 1878735 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 1879590 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 3926132 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 5709630 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 6164631 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 6637575 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 6762811 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 6780096 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile