RNA id: AMCG00016403


Basic Information

Item Value
RNA id AMCG00016403
length 339
RNA type mRNA
GC content 0.47
exon number 2
gene id AMCG00016403
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19006083 ~ 19014749 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttcttccattggaaaacaaaatgaaagaaccCAAACGTTTTCCAGTAGCCCTCAACATTGGAATGGGAATCGTCACTTTTCTATACATCACTCTAGCCACGTTTGGATACCTCCATTTTGGTGATGATATAAAAGGAAGTATAACCCTCAACCTGCCACACAACGCATGGACCAACCAGATGGTGAAAATTCTCTACTCCTTTGGGGTTTTTGTGACCTACTCAATCCAGTTCTTTGTACCAGCGGAGATCATTCTCCCAGCACTCAAGTCCAGGgtgagggagaggtggagacGGCCTTGTGAGTTCACAGTGAGAGCCCTTCTGGTGTGCCTGACC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16520 lncRNA downstream 104107 18826194 ~ 18901976 (-) True G13334
TU16425 lncRNA downstream 840313 18162787 ~ 18165770 (-) True G13254
TU16302 lncRNA downstream 1465738 17538034 ~ 17540345 (-) False AMCG00016376
TU16264 lncRNA downstream 1509736 17495923 ~ 17496347 (-) True G13129
TU16261 lncRNA downstream 1511737 17493855 ~ 17494346 (-) True G13126
TU16525 lncRNA upstream 43656 19058405 ~ 19058673 (-) True G13339
TU16528 lncRNA upstream 62619 19077368 ~ 19077823 (-) True G13341
TU16555 lncRNA upstream 73475 19088224 ~ 19088632 (-) True G13366
TU16588 lncRNA upstream 150837 19165586 ~ 19253414 (-) True G13392
TU16615 lncRNA upstream 241889 19256638 ~ 19256919 (-) True G13413
AMCG00016402 mRNA downstream 104502 18897556 ~ 18901581 (-) True AMCG00016402
AMCG00016401 mRNA downstream 570055 18420753 ~ 18436028 (-) True AMCG00016401
AMCG00016400 mRNA downstream 606325 18380464 ~ 18399758 (-) True AMCG00016400
AMCG00016399 mRNA downstream 656706 18330193 ~ 18349377 (-) True AMCG00016399
AMCG00016398 mRNA downstream 713224 18274230 ~ 18292859 (-) True AMCG00016398
AMCG00016404 mRNA upstream 11089 19025838 ~ 19039504 (-) True AMCG00016404
AMCG00016409 mRNA upstream 94393 19109142 ~ 19143518 (-) True AMCG00016409
AMCG00016410 mRNA upstream 140585 19155334 ~ 19161728 (-) True AMCG00016410
AMCG00016414 mRNA upstream 170189 19184938 ~ 19205594 (-) True AMCG00016414
AMCG00016419 mRNA upstream 262549 19277298 ~ 19279668 (-) True AMCG00016419
TU16024 other downstream 2144904 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 2144904 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 2144904 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 4214114 14790203 ~ 14791969 (-) False AMCG00016293
TU15220 other downstream 5446899 13554585 ~ 13559184 (-) False AMCG00016246
TU16556 other upstream 76490 19091239 ~ 19105381 (-) True G13367
TU16905 other upstream 1120448 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 4440343 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 4684400 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 5296288 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile