RNA id: AMCG00016405


Basic Information

Item Value
RNA id AMCG00016405
length 10065
RNA type mRNA
GC content 0.50
exon number 23
gene id AMCG00016405
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18703867 ~ 18762647 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGACAGTAATGGACGGAGGCCCTTCCTCTCGGCAGTCGACAGTCTGGGTGATAGTGCACGTACTGGATGAGAATGACAACAAGCCTCAGTTCCCCGAAAAGGTTTACCAAATAAAACTCCCTGAGCGGGACCGTaagaaaagaggagatccgatctATAGGGTGTTTGCCTATGACAGAGACGAGGGGCCGAACGCCGACCTCTCCTACAGCATAGTAGATGGAAATGAAGATGGCAAATTCTTCATTGATCCCAAAACTGCGATGGTATCCTCCAGAAAGCAGTTCACGGCTGGGAGTTATGACATCCTTACGGTGAAAGCTGTAGACAACGGACGCCCACAGAAGTCCTCCACAGCTCGTCTGCACATTGAGTGGATTAAGAAGCCGCCGCCGTCCCCCCACCCTCTGGTGTTTGATGAGCCCTTCTACAACTTCACGGTGATGGAGCACGACAAGGTGGCGGAGATCGTCGGGGTGGTCTCCATGCAGCAGGCGCCTGCCCCTCTGTGGTTCGACATCACTGGTGGAAACTACGACAGCATATTTGACATTGAAAAAGGAGTGGGGACGATTGTCATTGCCAAGCCACTGGATGCGGAGCAAAGGTCATTTTACAATATGACTGTGGAGGCAACTGATGGTACCAATTCTGCTTCTACACAGGTGTTCATTACAGTGCTGGATAACAACGACAATGGCCCAGTCTTTTCCCAGCCCGGCTATGACATCACCATCTCAGAGGACACGCCCGCCGACTCCGAGGTGCTACAGGTAGTCGCCACGGATAAAGATGAAAAGCACAAACTGAGCTACTCCATCCACAGCAGCATTGATCCCGTCAGTATGCGCATGTTCAGGATAGACCCTGGCACAGGAACCATCTACACCACCGAGAGGCTCGACCACGAGGCCCGTGCCCAGCACATTTTAACTGTGATGGTGAGAGATCAGGAGTTCCCATATCGAAGAAACTTGGCCCGAATCCTTGTTAATGTTGAGGACTCAAACGACCACGCCCCCTACTTCACCAGTGCTCTGTATGAGGGCTCTGTCTTCGAGTCAGCTGCCATTGGGTCTGCGGTTCTGCAGGTGACGGCTTTGGACAAAGACAAAGGAGAAAATTCAGAGCTGCTATACTCCATAGAAGCAGgaaATACTGGAAACACATTTAGGATTGAACCAGTGCTGGGCATTATATCAGTCGCTAAAGAACTGGACCTGACTTCCATCGGCCATTATGTCATCACTGTGAGAGTTACTGACAATGGCTCGCCTGCACTGGGTGCTACCACAATGGTGCGGATCTCCGTGACGCTCTCTGACAACTCCAATCCCAAGTTCCCTCAGAAGGAATATCAGGCTGAAATCAATGAAAACGTGGCTATTGGCACATCAGTCACTATGATTGCTGCTGTGAGCCAGTCTACCTTAATTTATGAAATCAAACTTGGGAACAgcaacagaacatttaaaatgaaccaATATTCAGGAGTCATTACTACTCAGAAACCTCTTGATTATGAAAACATCGCTTCATATCTTCTTATAATCCAGGCGACCAACATGGCAGGAATGGCTTCTAATGTCACTGTCAATATCCAGATTGTAGATGAAAATGACAACCCTCCAGTCTTTCAGCAGCTGCAGTATTCAGGAACTATTAGTGAGGCTGCTCCTATCAATAGTGTGGTTTTGAGTTCTGACAACAGTCCTTTGGTTATTAAAGCAACAGATGCAGATGAAAACCAGAACGCCCTCCTTGTCTATCAAATAGTAGAAGACACggccaaaatgtttttcacagtgGATTCCAGTACAGGATCTATAAGAACCATTGCTAACCTGGACCATGAGAAATTttcaagttttcattttcatgtacaTGTGAGAGACAGTGGTAAACCCCAGCTCACTGCAGAGAGTCCGACAGAGGTTACCATCCAAGTTGTTGACACAAATGACTCTCCACCAAAATTTTCTCAAGATGTCTATGAAACTATCCTGTTACTTCCGACTTACGTTGGAGTTGAGGTTCTCAAGGTTTCGGCCACTGATCCAGACTTGGATGTACCAGCTGAGCTTATTTATACCCTAACAGAAGGAAACACAGATCATTTTTCTATGGAACCCACCAGTGGCATCCTTacagtaaaaaacaataacttctTCAAGGACCGTTACCGATTTAATGTCAGAGTTTCCGATGGGAAGTTTTCTAGCACTGGTTTGATCACTGTATTAGTCAAAGAGGCCATGGACAGCGGTCTGTACTTCACACACAACGTGTACTCTACTTCAATCCTGGAAAACAGAACCAACATCACAAAGGTAGCCGTTGTGAGTGCAGTCGGAAACCGTCTGAATGAACCTTTAAAGTATGCCTTGTTGAACGCTGGTACTAAGTTCAGGATAAAGCCAACATCAGGAGTGATTCTGACCACTGGAGTCCCATTTGACAGGGAAGAACAGGAGTTTTATGACCTTGTCGTGGAGGCAAGCCGTGAACATGATCATCTACGGGTAGCGAGAGTACTGGTGAAGGTCCAAGTGGAAGACATCAATGATAACCCACCAGTGTTTGTGGGTCTGCCATATTATGCTGCAGTGCAGGTAGAAGCAGAACCTGGAGCTCCAATATATCGAGTCACAGCAGTTGACCGAGATAAGGGAATAAATGGGGAAGTGGCCTATTTTTTAAAGGATGACTACGGGCACTTTGAAATAAACCGACATACTGGTGACCTCACTCTCAAGAAAGCCTTTGAGTCAGACCTGTCAAATGTTGAGTATGAGGTGGTTGTTTTTGCCAAAGATGGTGGCTATCCTTCACTTTCCACTACCATAGAGTTCCCAATCACTGTAGTGAACAAAGCCATGCCTGTTTTCGATAAATCCTTTTACGCAACTTCAGTTAATGAAGACATTGTGGTGCACACCCCTGTTCTTAGTATTAATGCCACCAGCCCCGAAGGCCAGAACATCATATACACCATCGTCGACGGTGACCCGTACATGCAGTTTAATATTGATTTCGACACTGGCATAATAAGTGTGATTAATGCGCTAGACTATGAAGTCAGTCCCCTTTTTAGATTGATTGTAAGAGCAACCGACTCCTTAACGGGAGCCAGAGCTGAAGTAGACGTTGACATAACTGTACTTGATGTGAACGACAACTCCCCAATGTTTGAGAAAACGTTCTACAAAGCAACTTTGTCTGAAACCTCCATGATTGGCACTCCAGCTGTCCAAGTCATTGCTGTAGACAGAGATTCTGAGAAAAACAGCAATGTACGCTATCAGATTTTTTCGGACATATACAACAACACAGACTATTTTCACATCGACAGCAGCAGTGGACTGATATTGACAGCTCGCATGCTCGACCATGAGCTGGTTCAGCAGTATGACTTTACTGTCAAGGCGACAGATAACGGATTCCCCCCTCTCAGCAGTGAAGTGTCAGTCACTGTGTATGTGAACGACATGAACGACAACCCTCCGGTCTTCAACCAGTTGCTCTATGAGTCATACGTCAGTGAACTTGCTCCAAAGGGACATTTTGTGACCTGCGTACAAGCATCGGACGCAGATAGTTCTGATGTTGACAAGCTGGAGTATAGCATATTATCAGGGAACGAGCGGATGAATTTCGTAATGGACAGTAAAACAGGGACCATTACTTTATCTAACCACCGCAAGCAAAGAATGGAACCTGCTTACAACTTGAACGTATCAGTGTCCGATGGCGTCTTCACTAGCACCGCCCAGGTCCATATTAAAGTTCTTGGAGCCAACCTCTACAGCCCTGTTTTCACTCAGAGTGTTTACGTCGCGGAGGTCCGGGAGAATGCAGCCGCAGGATCCAAGGTGATCCAGGTAAAGGCCACTGATGTAGACTCCGGGGCCTTTGGTCAAGTCACATATTCCTTCGTCAACGATTTAGGAAATGATCAGTTCAACATCGATATCAATGGTCAGATCACCACCATGGAAAAGTTGGACAGAGAGAGTCCCgccaataaagaaataattcTAACTGTAATGGCGTTGGACGGAGGGGGCAGAGCTTCCTTCTGCACCGTCAGGGTGATGCTGGTGGATGAAAATGATAATGCTCCTCGGTTCAGAGCAATGGAATATAGAGTGAGTGTCAAGGCCGATGTCGGGAAGGGGTTCCTGGTCACACAGATACAGGCCTACGATCCAGATGACGGTGCAAATGCTCGGATCACTTATTCCCTCTACAGCGAGGCCCATGTTCCTGTCGTTGACATTTTGGAAATTGATCCTGACAACGGATGGATGGTCACCAAAGGCAACTTCAACCACCTAAAAAATTCAATCCTCTCCTTCTTTGTAAAAGCTGTAGATGGGGGGATTCCTATAAAACACTCCCTTGTGCCGGTCTACATCCATGTCATGTCTCCTGAATCCACCATACCTCACTTCACTCAGCCTCAGTATTCCTTTACAGTGCCTGAAGACACCCCCATAGGAGCTGCCCTTGGCTCTGTCCACCTTGCTCTGGGTCAGTCAGCGATATTCAGCGTTGTAAATGGGGAAATGGGTGAAAACAATCAGGAAGAGGTGTTTGTGGTTGAGAGGGACACAGGCGTTATCAAGTTAGACAAGGCCCTTGACCACGAAACAATCGATGCCTATCATTTCAAAGTTGCCGCCATTATTAAGCAAGGCCGGCTGGACTCGGTCTCTGTTGTGGATGTAGAAGTCAAAGTACTGGATTTAAACGACAACAGACCTTCTTTTGAGACCAGTTCTTATGAGGCAATTGTAATGGAGGGAATGCCCATCGGAACCAAAATAATCCAAGTGAGAGCCTTGGATCCGGACTGGGGAGCAAATGGACAAGTCACCTACAACCTGATTCCCTCACCTCACACAGAGCTGGATCAGACGTTAGACACCTTCACTATTGACAGCAATACCGGCTGGATCAGCACTTTGAAAGACCTTGACCATGAAAGGAATCCTTCCTACACCTTTGCTGTGGTGGCGTCAGACCTCGGAGAGACCGTTTCTTTGTCTTCTACAACTACGGTTTCTGTCACCATCACAGACATTAATGATAACGCCCCCAATTTTGTGGATGAATTTTACAAagggacagtgagagagagtgatcCTCCAGGGGAAGTGGTCGCTGTCCTGAGCACACAAGATGATGACACATCTGATATAAATCGCCAGGTCAGCTTTCATATTACAGGTGGAAACCCAAAGGGACAGTTTGCTCTGGGATTGATACAGTCTGAGTGGAAGATGTATGTGAAGAAGCCTCTGGATCGTGAAGAACAAGACATGTATCTTCTTAATATCACTGCTACCGATGGGCTGTTTGTAACAAGGGCAGTGGTAGAAGTTGCTGTGACAGATACCAATGACAACAGCCCTGTTTGTGACCAGGTGGTGTATACTGCATCATTCCCCGAAGATATACCTATAAATAAAGTTATCCTGAAGATAGGAGCTACAGATGCAGATATTGGCTCCAATGCTGAAATACAATACTCATTACATGGGTCTGGTGCTGAAGACTTCTTATTGGACCAAGACAATGgTGAGCTGAAGACCATGTTCTCTATGGACCGGGAGAAGACCCCCGTGTATAAGATATTTGCCAGAGCTACGGATGGAGGGGGACGCTATTGCAAGTCGGATATCTATCTAACTGTTGAAGATGTGAACGATAACCCTCCCCTGTTTTCAGACAGCCATTACACAGCCAGCGTTTATGAGAATACTGCCACTAAAGCCCTATTAACTAGACTGCAAGCCAATGACCCAGATGTAGGTCTTAACAGGAAAGTTGTCTATTCTCTGGTGGACTCTGCAAACGGTTTCTTCTCCATTGACAAATCCTCTGGTATTATTGTTCTGGAGAAGACACTGGACAGGGAACAACAGGCTCTGTACAACATCACTGTTAGGGCCTCCGACCAGGGGCAGGCTGTGCAGCTGGCTTCTTTGGTTAACGTTACCATTACAGTACTGGATATTAACGACAACCCTCCAGTTTTTGAGAGACGGGACTATTTGGCTACAGTGCCTGAAGATGTGTCTCTGGGCACCGCGGTGTTGACGATCTATGCCGCAAGCAAAGATATTGGCACcaatgcagaaatgtattatagtaTCAGATCTGGCAATGAACATGGAAAATTTCTGATTGATCCCTTGACAGGTACCATCTCTATTTCCAAAAACCTGGACTACGAGATGTGTAAAGATTACTTCCTCACCATTGAAGCCAGAGACGGTGGTACCCCTCCTCTTAGTGCTGTCACCACAGTGAATATTAACCTGACAGATGTAAATGACAATGCCCCTGTCTTTAGTCGAGACAGCTACAGCACGGTCATCAGCGAAGACGCCAGCATCGGGGAATCAATTCTCAAGTTGATGGCTGAGGACTTGGACAGTCCAGTGAATGGGCAGATTTTATACTCCATTGTGAGTGGAGATCGGGAAAATCAGTTTTTCATTGATCCAATCACAGGACTAATGAAGGTCAATAAGCAACTTGACAGAGAGACGGTGTCTGGCTATTCGCTGGCAGTGCGCGCTCTTGACAGCGGATCACCTGCCATGTCATCTACAGTGGTGGTGAACATCGACATCTCTGATGTGAATGATAACCCTCCCCTCTTCACCCCATCCAATTACACCACTGTCATTCAGGAAAATAAGCAAATAGGAACCAGCATCGTGCAGCTGTCTGTCACTGACAAGGACTCTTCCCACAATGGCCCTCCTTACGAGTTCAGTATTGTTTCTGGAAATGAAGGAAATGAATTCACTCTGGATCAGAATGGAGTACTTAAGTCCAACTTTGTTTTCAGACAGGAAGTGGCAACTGAGTATGTTATCTCTGTACAGGCAAAAGACTCTGGGAAGCCCAGACTATCATCCACATCTTTTGTCTTCATCCGGGTGATTGAGGAGAGCACTCACAAGCCCATTGCCATTCCTCTGGAGATATACATCGTGACCATGGAGGATGAGTTTCCAGGGGGTGTCATCGGGAAGATCCACGCCACAGACCAGGACATATATGACGTGCTGTCTTTCACTCACAAGTACCAGCAGAAAAGCCTCTTCAAAATCAACAGGCAAGATGGGAAGATCATTGCCCTGGGAGGCCTGGACACTGGGAAGTACTTTCTGAACGTGACGGTGAGCGACGGGCGCTTTGCCGTCCCCGTGGACGTGATTGTACATGTCGAGCAGGTGACACCGGAGATGCTGCAGAACTCGGTCACCATTCGCTTCGAGAGAGTCACCCCCGAAGACTTCATTGGCCTGCACCTGCGCATCTTCAAGAGGGTCCTGAGGAACGTAGTGGCCTCCCAGAAACAAGACACCCTTCATATCCTCAGCATCCAACCAGTTGCTGGGACCAGCCAGCTGGACATGCTGTTTGCTGTGCAGACCTTGGCCGGGGGTTTCTACAAGGCCGCGTACCTCACCCAGAAGCTGAGTACCTCCAAGAGACACTTGGAGAACGTGCTTCGCATCTCGGCGATCCTAGACAAGAACTGCTCGGGGCTGGAGTGCCAAGAGAAGCTGTGCGAGCAGACCATCTCTCTGGACTCCCATGCGCTGGTGACTTACAGCACAGCAAGGATCAGCTTTGTCTCCCCCCGTTTCCACAGGAACACCAGGTGCACCTGCAATGGTGGCAGCTGTCCTGGCTCCTCAGAGCTGTGTGCTGACCAGCCATGCCCTGGGGACATGCAGTGTGTTGGTGGCACAGGAAGCCGAGGTCCCTATATGTGTCAGTGCCCCCCTGGCAAGCTGGGAGAGTGTGCGGGCCACACATCTCTGAGCTTTGCTGGAAACAGTTACATCAAATACCGGGTGTCAGATGGGAGCAAGGCGGACGAGCTGAGGTTAGGGCTGCGTCTGAGAACTCTGCAGAGCAAGGGCATCATCATGTACACCAGAGCCGACCCCTGCACCATTCTGAAGATTGAGGATGGCAAGCTGTGGTTCCAGTTGGACTGTGGCAACAGCCCCGGCATGCTGGTGATCTCTGGGCGGCCCATTAATGACGGGAACTGGCACACAGTGTTTCTGGAGCTTAACCGCAACTTCACAAGCCTGTCACTGGATGATATCTATGTCGAGCGCCGCAGGGCCCCCTTGCACTACCAACCCCTGGGGCCTGATGGCTCCATCTATTTTGGCGCCCAGGTCCAGCCGCCTAACCCCCAGAGCCCAACAGACATCAAGAGTCCCCAAGTGCTCGGAGGCTTTCAGGGCTGCCTGGACTCCGTCGTGCTCAACAACAACGAGCTGCCGCTTCAGAACAAGAGGAGCCGCTACGCAGAAGTCGTGGGCCTGACTGAGCTGAAGCTGGGCTGTGTGTTGTACCCTGACGCCTGTGAAAAGACCGGCTGTCAGAACGGTGGGAGTTGTGCGAGTCTGCCATCTGGTGGTTTTGAGTGCACTTGCACTGCTCAGTTCACAGGGGTACAGTGTGAGACTGAAATCACCTCCTGCGTCCCCAACCCCTGTCAGAACGGAGGGTCCTGCAAACCTATAGGAAACGCCTTCCTCTGCAGCTGCAGGAGGGGATTTACTGGACTAACCTGTGATGACGACGTGAacgagtgtgagagagaggaatgcGAGAACGGCGGCCTGTGCGTCAACACGTTCGGCGCTTTCTACTGCAACTGCACGGCGGGCTACGTGGGCCAGTACTGCGGACTCAGGCCGGTGGTGGTGCCCAATATCCGGGCAGGCCACACCTACGTGGGGAAGGAGGAGCTGATTGGCATCGCGGTGGTGCTCTTCGTCATCTTCGTCCTCATCGTCCTCTTCATCGCCTTCCGCAAGAAGGTCTTCCGCAAGAATTACTCCCGCAACAACATCACGCTGGTGCAGGACCCAGCCACGGCCGCCCTCCTCAACAAGGCCAACGGGATACAGTTCAAAAGCGTGCGCAACAACGCAGACCCCTGTAACCTGTACCAGGAGGCGGGCGGGCCCCCGCAGGTTCCCGTCCGGCCCATGGCCTACACCCCGTGCTTTCAGAGCGACTCCCGGAGCAACCTGGACAAGATCGTGGACAGCCTGGGCGTGGAGCACACAGAGATGACCACCTTCCACCCGGAGTCGCCCCGCATCCTCACCACCAGGAGGGGCGTGGTGGTGTGCAGCGTGGCCCCCAACCTGCCCCCGGTCTCCCCGTGCCGCTCAGACTGCGACTCCATCAGGAAGACCACCTGGGAGACGGACACTGAGGGTAAAGTGGTAGACATGGTAGAAGAAGTCACTTGTTTTTCAGGCAGTAACAAAGGCAGCAATTCGGAGGTCCAGTCCCTTAACTCCTTCCAGTCTGACTCCTGTGATGACAATGCTTCCATAGTGACTGTCATTCGACTGGTCAATGATGCAGTTGACACTATCGAAAATGAAGCTTATCACTGGGACACTTCAGACTGGATGCCCAGCACCCGATTGCCTGATATCGAAGAAGTCCCCAGTTACGAAGCAGGGGATAATTCCTCGGCGCACCTGGGCAGCACCAGGGAGCTAGAGACGGATTACTACTTGGGTGGGTACGACATTGACAGTGACTTCCCTCCCCCACAAGAGGAGGAGTTCCTCAGCCAGGACCAACTGCCCCCACCACTGCCAGAGGAGTACCAGGAACATTACGATTCCCTGCCCCCACCACAGCCCATTTCTGTGGAGAGCACCCTGAGCACCAACAGCCGGCAGCGGCCTCACTTCCACCCAAGCCAGTACCTCCCGCCACATCAGTTTCCAGGGGACCTGGAAGCCCAAACCGGAGTGGAGGAGTTCAGCACTTTCACCATCGGCCGCAGGCAAGACCTGGAGCCGGAGAACATAGACAACATGTCGTTGACCCTGCGCTTGTCCACGAACGCCTCCTCGTCGGACGTTTCTGCCAGCTGTGGCTTCGACGACTCTGAGGCGGCCATCAGTGACTTTGAGAGTGTGGACGAGCTCAATTATGACAGTGTGCACCTCCCTTTCATGGAGACCCAGCAGCAGACTCAAGTGTGA

Function

GO: NA

KEGG:

id description
K16506 FAT1_2_3; protocadherin Fat 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16472 lncRNA upstream 230178 18419017 ~ 18473689 (+) False AMCG00016407
TU16449 lncRNA upstream 388511 18310528 ~ 18315356 (+) True G13274
TU16448 lncRNA upstream 415606 18288040 ~ 18288261 (+) True G13273
TU16445 lncRNA upstream 429428 18270033 ~ 18274439 (+) True G13270
TU16442 lncRNA upstream 438461 18265202 ~ 18265406 (+) True G13267
TU16508 lncRNA downstream 20801 18783448 ~ 18826531 (+) True G13323
TU16530 lncRNA downstream 328594 19091241 ~ 19105528 (+) True G13342
TU16531 lncRNA downstream 328594 19091241 ~ 19103960 (+) False G13342
TU16553 lncRNA downstream 398935 19161582 ~ 19161812 (+) True G13364
TU16613 lncRNA downstream 493078 19255725 ~ 19255932 (+) True G13411
AMCG00016412 mRNA upstream 40503 18663002 ~ 18663364 (+) True AMCG00016412
AMCG00016411 mRNA upstream 68061 18628428 ~ 18635806 (+) True AMCG00016411
AMCG00016407 mRNA upstream 274771 18419017 ~ 18429096 (+) True AMCG00016407
AMCG00016397 mRNA upstream 333480 18364738 ~ 18370387 (+) True AMCG00016397
AMCG00016393 mRNA upstream 538738 18157707 ~ 18165129 (+) True AMCG00016393
AMCG00016408 mRNA downstream 29276 18791923 ~ 19090628 (+) True AMCG00016408
AMCG00016406 mRNA downstream 383713 19146360 ~ 19153760 (+) True AMCG00016406
AMCG00016413 mRNA downstream 461614 19224261 ~ 19237093 (+) True AMCG00016413
AMCG00016416 mRNA downstream 476540 19239187 ~ 19251854 (+) True AMCG00016416
AMCG00016415 mRNA downstream 554181 19316828 ~ 19322281 (+) True AMCG00016415
TU16114 other upstream 1581935 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 2217864 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 2217864 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 2218719 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 4265261 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 5317370 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 5772371 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 6245315 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 6370551 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 6387836 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile