RNA id: AMCG00016407


Basic Information

Item Value
RNA id AMCG00016407
length 2667
RNA type mRNA
GC content 0.45
exon number 16
gene id AMCG00016407
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18419017 ~ 18473689 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGATTTCTATGGGGGACTGAGGTCGAGTTCGTGTAGCGCAGCTctctgctccaccaatgggatcggcgcaattctgcagatctgcgccgAACTGCTGCGGGAATCGGCGCTAATCGAACGCAACGTGGATTCTctcagcTGGTGTCAGTGACAAAACATGGGGAGTCAGAACAACTTTTTCAAATGGTGTTGCTTGTTAGTAgctgttactgttttttttctttttggatttTTAATAgGAAGGTTTGCCCAGCCCACAGCCCACAAAACACATTCCCAACAAAGCTACCTAAAAGGATTGCTCAATGAAATGAAAGCCGAGAACATCAGGCAGTACCTCAGGAAGTTCACTCTGCTTCCTCACCTGGCCGAACCTGAACAGAACAGAGCAGAACCTGCGCCTGGCCAAGCACATCAGGGATGAGTGGCTGCAGTTTGGACTGGATTCGGTGGAAATTGTCCCTTACGATGTTTTGCTGTCCTATCCTAATGAAAGCAACCCAAACTACATCTCTATCATTGATAATCTAGGAAAAGAGATTTTCAATACCTCCTTATCTGAGCCCATCCCTGATGGATATGGGAACATCCCCAATATTGTGCCCCCCTACAATGCCTTCTCTCCCAAAGGTCAGCCGGAGGGCGACCTGGTGTATGTGAACTATGCACGGACAGAGGACTTTTTTCAGCTGGAGCAACAGATGGGGATAAACTGTTCTGGGAAAATTGTCATCGCAAGATACGGGAAAATCTTCAGGGGCAACAAGGTGAAGAATGCGATCCTGGCTGGTGCAACGGGTATCATCCTATTCTCGGACCCAGCTGACTACTGTGCTCCGGGGGTGGATGTTTACCCCCATGGCTGGAATCTCCCAGGAGGTGGAGTCCAGCGAGGGAATGTATTGAACCTCAATGGGGCAGGAGACCCACTAACGCCAGGCTATCCTGCGAAAGaatATACCTATAGATCCAATATAGATGACGGGGTTGGTCTTCCTAAAATCCCTGTGCATCCCATTGGTTATAACGATGCCGTCCATTTACTCAGAAATATGGCTGGGAATGTTCCTCCGAACAACTGGAAGGGGGCTCTCAATGTTTCATACAAAACTGGTCCAGGTTTTGCTGGAGAGTTTGCCACACAAAAAGTCAAAAtgaacatccacacaaacaacAAGGTCACCAGAATATACAATGTCATTGGCAAACTTCTTGGAGCTATTGAGCCCGGTAGGTTTTTGcataacttttttgtattattattttttcttctagttTGTTACAGTTTGCTTCCCAGTTCTGAACATTCCAAGGCCATTCAATTATTCCTATCTGACATGTGATAGATCTCATGACTTACCCAGCCATAAAAGACCTTTGTTCACCTGAGAGTCATACTCATTTCTCGGCCTTGTTCTTCTGACCCTTTAAGGAGTGGACTAAAATCTGCTTCTCTTCATCTTGCTTTCCTCTTGcatgttaatattaataataatatgtaataatgttATGTAATACCTATGGAAAAGAATAATAAGACTGTCTGTGCCACACAGGCTAGTCCATTTAAAGCACATTGTACTTTGACTATTGTAGGTTGTCAGGTCATGTCTAAGTTGTACCACTGTAAGCCTCTGTAgtactatttaaaaacactgcttaAACCTTAAAGAAGCTAGAGGTTAACTTAAATTAGCCacaccattaaaaaaatctggAGAGGTTTGTATGAATACTTACCCAATGATTGTGTAAGTGACAAAATTGACTGAAATCAAGTTCTTAACTTTCCTCCCTCTCATCACTGCTGTCACACCTCTGAGATTTGCTGGCAagatttctgatttctgatttatttcCTCTCGTTGCTCATgctaaaatacattgaaaactgTGTGACAGACAGATATGTGATTCTGGGAGGACACCGCGACTCTTGGGTTTTCGGAGGGATCGATCCCACCACAGGTGCGGCGGTCGTTCACGAGATTGTAAGAAGCGCAGGGAAGCTTGTGAAGGAAGGGTGGGGGCCCAGACGGACGATGATTTTTGCTAGTTGGGATGCTGAAGAATTTGGCTTGTTGGGGTCTACAGAGTGGGCTGAGGACAATGCTAAACTGTTGCAACAAAGAGGTGTAGCTTACATTAACGCTGATTCTGCTATAGAAGAATCAGTAAGCTTGGTTCTGGCAGTGACTTTGAAGCGTATTTCATACGGCTTGGAATTGCTTCTGGGAGAGCAAGATACACTAAAAATAGGCGTCTACGAGACGTTCGAACTGGTGGAAAAGTTTTACGATCCGTCCTTTAAAAGGCTGTTGGCTGTGGCACAGGTCCGCGCCGGGCTCATCTTCCAGCTGGCCGATGCCCTGGTGCTCCCGTTAGATTGCAACGAGTATGCAGGCGCCTTGAGGAAATACGCAAACAGCATCTTCAACCTGGCCTCACAACACCAGTCTGATCTGGTCAAGTATGGAGTCTCATTCGACTCTCTGTTTTCTGCAGTTGAGAACTTCACAACAGCTGCCAAAGATTTCCACGACCGTCTACAGCATTTAGACACGACCAACCCATTGAAGGTCCGAATGGCGAATGATCAGATGATGTATTTAGAACGATCATTTGTGGATCCTCTTGGATTGCCGGGCAGACCCTTTTACAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16449 lncRNA upstream 103661 18310528 ~ 18315356 (+) True G13274
TU16448 lncRNA upstream 130756 18288040 ~ 18288261 (+) True G13273
TU16445 lncRNA upstream 144578 18270033 ~ 18274439 (+) True G13270
TU16442 lncRNA upstream 153611 18265202 ~ 18265406 (+) True G13267
TU16438 lncRNA upstream 156674 18259541 ~ 18262343 (+) True G13266
TU16508 lncRNA downstream 354352 18783448 ~ 18826531 (+) True G13323
TU16530 lncRNA downstream 662145 19091241 ~ 19105528 (+) True G13342
TU16531 lncRNA downstream 662145 19091241 ~ 19103960 (+) False G13342
TU16553 lncRNA downstream 732486 19161582 ~ 19161812 (+) True G13364
TU16613 lncRNA downstream 826629 19255725 ~ 19255932 (+) True G13411
AMCG00016397 mRNA upstream 48630 18364738 ~ 18370387 (+) True AMCG00016397
AMCG00016393 mRNA upstream 253888 18157707 ~ 18165129 (+) True AMCG00016393
AMCG00016394 mRNA upstream 318214 18098011 ~ 18100803 (+) True AMCG00016394
AMCG00016388 mRNA upstream 333914 18081922 ~ 18085103 (+) True AMCG00016388
AMCG00016387 mRNA upstream 531281 17875444 ~ 17887736 (+) True AMCG00016387
AMCG00016411 mRNA downstream 199332 18628428 ~ 18635806 (+) True AMCG00016411
AMCG00016412 mRNA downstream 233906 18663002 ~ 18663364 (+) True AMCG00016412
AMCG00016405 mRNA downstream 274771 18703867 ~ 18762647 (+) True AMCG00016405
AMCG00016408 mRNA downstream 362827 18791923 ~ 19090628 (+) True AMCG00016408
AMCG00016406 mRNA downstream 717264 19146360 ~ 19153760 (+) True AMCG00016406
TU16114 other upstream 1297085 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 1933014 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 1933014 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 1933869 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 3980411 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 5650921 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 6105922 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 6578866 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 6704102 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 6721387 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile