RNA id: AMCG00016411


Basic Information

Item Value
RNA id AMCG00016411
length 2055
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00016411
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18628428 ~ 18635806 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCGTCCAACATCTTAGTAACTTAAATAAAGAGTCCTTCGAACTTGAAGTGGTTGAGCTAGACAGTGAATTAAGAGTGAGGGTGAGGATCACTATTGAAGATGCGAATGACCACATGCCTTTGTTTCAGCAGCCTGCCTATGAAGTGTTCGTAAACGAAAGCATTCCAGTCGGAACAAATGTTTTGACCATCTCCGCTTCAGATAATGACAAGGGTGAGAATGGATATATAACTTACAGCATTGCCAGTCTCCAGCCATTGCCGTTTACAATTAACCAGTTCACTGGAGTTATAAGCACAAACAAAGAGCTGGATTTTGAATCCTCATCAGAgagttatgtatttgttgtcaGGGCCTCTGATTGGGGTTCGCCATACCGACGTGAATGTGAAGCCAACATCACTGTTCACCTGGAAAATGTCAATGACAACCAGCCCCTGTTTGAGAAAATAGCCTGTCAAGGTGTAATATCACGCGAATTACCTGTTGGGGAAGTGATCACGACTATGTCTGCCATAGACATAGACGAGCTTGAGTTAGTCAAATACAAGATCCTCACTGGCAACGAACGTGGCTTCTTTGATCTGAACCCTGACTCTGGTGTGCTGACCTTGAGGAGGTCTCTAATTACTGCCAATCCGAGAAACGGAgtctttaatttgaaaataacagcAACCGATGGGGAAAACTTTTCCGACCCAATGTTTGTTAATATCTCCATTGTGCATGGAAAAATGCCTTCTAAAAGCTTTTCCTGCAAAGAAACCAGAGTTGCTCAGAAGTTGGCAGAAAAGCTGCTTAAAAAAGCTAAGGCTAATAATAAACCCAAAATTGAAGATGGATTTATAGATCTCTTCTCGGTGAACAGACAGACTCCACAGTTTGATAAATCTTTTCCTTCTGAGATCTCTGTACGTGAGGACCTTAAAATTGGAGCGAGTGTCTTCAGGGTTAAGGCCTATGATGGGGACACCGGCTTTAATGGTCTGATATTATATGTAATCTCTGATGGCAACAAAGACAGTTGTTTCAACATTGACCTTGAAAGTGGATTAATAACGGTGCTGATGCCGATGGATCGTGAAAAATCAGATTCGTATCTTCTCAATATCACCATCTACGACTTAGGCCAGCCGCAGAAATCAACATGGCGGCTGTTGACTGTGCACGTGGAGGACGCTAACGACAACACACCACAGTTCTTACAGGACAACTATAGTGCGGTGATTCCTGAAAACACAATCATTGGCACAGAAATCATTCAGGTCGAAGCCACCGATAAGGATTTAGGGCCTAATGGTGCTATTTTGTACACCATGTTAACGAGCACAACTCAGTTTGGGATTAACAGCACAAATGGAATTGTTTATGTAGCTGGTCAGCTTGACAGGGAGTTCCTggccatttttaatttaagaatagAGGCCCGTGACAAAGCTGAGAGAGGGAGTCAGCGGTACTCGGTTACGTCTTTACGGATATCCTTGGAAGATGTCAATGACTGCCCTCCAGCTTTCATTCCTAGCTATTACAATGCGAAGGTCCTTGAAGATTTACCTGTGGGCACCATCATAGCCTGGCTGGAGACTCAGGATCCTGATCTGGGATTAGGAGGCCAGGTCAGATACTCCTTGGCAAACGACTACAGTGGAAAATTCGAGATTGATAAAGCTAGCGGGGTGATTCGACTGGCCAAAGAACTGGATTATGAAAAGCAGCAGTTCTACAACTTGACAGTGAGGGCTAAGGATAAAGGTCGGCCTGTCTCTCTCCTTTCGGTGTCCTTTGTGGAGGTTGAAGTGGTGGACGTCAATGAAAATCTGTACCCACCCTATTTTTCCGATTTTGCTTTGACGGGTTCGGTCAAGGAAAACTCTCGGATCGGCACAAGTGTTCTTCAAGTCACCGCACGAGACGACGACgtggggagggatggagagattCAGTACTCCATTCGGGATGGAAGTGGTCTTGGTAGATTTTCGATTGACGAAGAAACAGaGGAGCTAATTTATGCCTTTCCACTTCTGAGCCCTGGCCATGTAGGCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16472 lncRNA upstream 154739 18419017 ~ 18473689 (+) False AMCG00016407
TU16449 lncRNA upstream 313072 18310528 ~ 18315356 (+) True G13274
TU16448 lncRNA upstream 340167 18288040 ~ 18288261 (+) True G13273
TU16445 lncRNA upstream 353989 18270033 ~ 18274439 (+) True G13270
TU16442 lncRNA upstream 363022 18265202 ~ 18265406 (+) True G13267
TU16508 lncRNA downstream 147642 18783448 ~ 18826531 (+) True G13323
TU16530 lncRNA downstream 455435 19091241 ~ 19105528 (+) True G13342
TU16531 lncRNA downstream 455435 19091241 ~ 19103960 (+) False G13342
TU16553 lncRNA downstream 525776 19161582 ~ 19161812 (+) True G13364
TU16613 lncRNA downstream 619919 19255725 ~ 19255932 (+) True G13411
AMCG00016407 mRNA upstream 199332 18419017 ~ 18429096 (+) True AMCG00016407
AMCG00016397 mRNA upstream 258041 18364738 ~ 18370387 (+) True AMCG00016397
AMCG00016393 mRNA upstream 463299 18157707 ~ 18165129 (+) True AMCG00016393
AMCG00016394 mRNA upstream 527625 18098011 ~ 18100803 (+) True AMCG00016394
AMCG00016388 mRNA upstream 543325 18081922 ~ 18085103 (+) True AMCG00016388
AMCG00016412 mRNA downstream 27196 18663002 ~ 18663364 (+) True AMCG00016412
AMCG00016405 mRNA downstream 68061 18703867 ~ 18762647 (+) True AMCG00016405
AMCG00016408 mRNA downstream 156117 18791923 ~ 19090628 (+) True AMCG00016408
AMCG00016406 mRNA downstream 510554 19146360 ~ 19153760 (+) True AMCG00016406
AMCG00016413 mRNA downstream 588455 19224261 ~ 19237093 (+) True AMCG00016413
TU16114 other upstream 1506496 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 2142425 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 2142425 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 2143280 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 4189822 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 5444211 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 5899212 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 6372156 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 6497392 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 6514677 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile