RNA id: AMCG00016413


Basic Information

Item Value
RNA id AMCG00016413
length 3199
RNA type mRNA
GC content 0.49
exon number 17
gene id AMCG00016413
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19224261 ~ 19237093 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTAACGCACAGACTCGCAGTTTCACAGTTTCATAACCTGGAAATCGATATCTTTTGTTGGAGCCAGAGGACAGAGGAAACACGTTGTGTTTTCCAAACATGATGCCATAAAACGGCAGACAGATTGGGTTTTAACTTGTATTCTTCGCCATACGGTGCCTGGGTCTGGGCAGCCACTGTGCAGCAATGAAGCCGTCGCCCGGCCCGGGGCTGCTGAGCCTCTGCTGTGTCTGCGCTCTGTTTCCTGCGCACGAAGGCGCCACCAGGCCTTATTACATTGGCATCAGAGAAGCAACCTGGGACTATGCGCCCAGCGGCCAAAACCTCATCACTGGCCAGGACGTCGGGGAAGATGAgcatGCATCTGTATTTCTGCAGCGAAGCCAACGGACTATAGGAAGTCAGTACAAGAAGGCTCTATATCATGAATACACTAATGGTAGCTATACTGAAGAAATTCCCAAACCCAGCTGGCTTGGGTCTCTTGGTCCAATCCTGAAGGCAGAGGTGGAAGACGTTATAGTTGTGCACTTGAAGAACTTTGCCACAAGACCGTACTCCATCCATCCACATGGTGTTTTCTACGATAAATACTCTGAAGGAGCCCTGTACCCTGACGGGACATCAGGGAACCAGAAGTGGGACGATGCTGTGAACCCTGGAGAGAACTACACCTACACTTGGGTGGTGAAGCCAGAGTACGCCCCAACTGAGGGCGACGCCAACTGTCTAACCTGGGTCTATCACTCACATGTGCATGCGCCTCGGGACATCAACTCTGGCCTGATCGGCAGCATGCTGACTTGTAAAAAAGGCACTTTCCTGGAAAACACGACTGTGCGGACGGATGTGGATCAGGACTTTGTTGCTATGTTCAGTGTGATAGATGAGAATCTGAGCTGGTATCTCCAGGACAACATCAAGACCTACTGCACTGATCCTTCTGCTGTGGATATACAGGATAAGACTTTTGAAGAATCCAACTATAAGCACGCCATCAACGGATATCTGTTTGGGAACCTGCCTGGCATCACCATGTGTGTGAACAGTAGGGTAAATTGGCATCTTTTTGGGATGGGGAACGAGATTGATATCCACTCTGCACATTTCTATGGCAACACTGTGGTGGACAGAGGCCACAGGTCTGATGTGATTAGCCTGTTTCCAGCCTCGTTTGCTACCTTGGAGATAAACCCTAGGAATGTTGGGAAATGGATGCTGAGTTGCCAAGTGAATGATCACATGCAAGCTGGAATGCAGGCTTTTTACGAAGTCGCCTCCTGTGGGAAAGATGGCCCTACAGCTTCCCCTAGCGGCAAAACAAGGCATTACTACATCGCTGCCGAAGAAATCATGTGGAGTTACGCGCCTTCAGGTGTCAAAGCTTTTAATGGTGTGCCTCCAAGTCACAGCATGCCAAGGGGACATTATTTGAAGGCTCATTATGTGGAATATACAGATCAGACTTTCACCACCAAGAAACAAACTGAGATGCATCTCGGTATTCTTGGCCCTGTGATAAAAGCAGAAGTTGATGACACCATTATAGTGACCTTCATGAATAAAGCAATGAGGAACTATAGCATCCAGCCGCATGGATTGCCTTATAAGAAAGAATACGAAGGAGTAAGCTATAATGATGGTATTGAGAAGCGTGGATCACATGTCCAGCCCAATGAAGTTTTCAGCTACAGGTGGACAGTGACTGACGGCCCGTCTCCCAGTGACCCGGCCTGCATTTCTTACCTGTACTACTCCGCCAGCGACCCTATTCGGGACACTAATTCAGGACTTTGTGGGCCTCTGTTACTGTGCAAGAAGGGTACTCTGAATAATAAAGGCCTACAGAAAGGGGTTGATAAGGAGTTCTTCCTGCTGTTCGCCGTGTTTGACGAGAACCTGAGCTGGTACATGGACAACAACATGCTCATGTCTGGGACAGGATCTCCAGACACAATGAATGATGGCATTGAGATGCCCAATGCAATGTCCAATGACATGTACATGCATGCTGTGAATGGTTACATGTACGGGAACCTGCCTGGACTTGAGATGTGTGAAGGAGACACCGTGTCCTGGCATATGCTGGGTCTGGGCTCAGAGATGGACGTACACGGTGTCTATTTCCAAGGCAACACCTTCAGGAGGGACGGAACCACACGAGACACGCTCAGCCTGTTCCCACACACTGCTGCCACTGTCACCATGCAGCCGGACTCTGCTGGTACATTTGAAGTGAGCTGCATGACCACAATGCATTACCAGGGAGGGATGCGACAGCTGTACACTGTGAAGAAGTGTATAGGCAGtcctccctcttctcccagttccaccaccaccacctcggTTGCGATATACTACATTGCTGCTGAGGAAGTGGAGTGGGATTATTCACCAGACAGGGTCTGGGAACTCGAGAAACACAATACCACTGAAGAAAAAAGTTATGGACAAGTCTTTTTAGGTAAAGGAGAGGACCGAATAGGCCCCAAGTACAAAAAGGTGGTGTACAGGGAGTACACTGACAGTCATTTCACAGAGCGGAACATGAGGTCTCCACGTGAGGAGCACTTGGAGATACTGGATTTTGTCAAGGACACTTTCAGTGGGCTGATTGGACCCTTGATTATCTGCAGGAGGGGCATTCTGAACTCAAAGAGACAGAGGGTGGATATAGACCGGGAATTTTCCCTTCTTTTCCTGGTGTTCGATGAAAATCAGTCCTGGTATCTGGATGACAACATCAAAACCTACCTACCCATGAACATGGAGATGAATCATGCTGAAATGGATGAAGACTTTATGGAAAGCAACAAAATGCATGCAATCAATGGGAAGATGTTTGGCAATCTTCATGGACTGACGATGATTGAAGGCGAGAAGACGGCCTGGTACCTGCTGGGAATGGGCAATGAGATGGACATACACACCGTCCATCTCCATGGGGAAACCTTCATTTACAAAACTGACAGATCCCACCGTGCTGATGTGTATGACGTGTTCCCAGGGACCTTCCAGGCTGTGGAACTGACTGCAGAGAACCCGGGCACCTGGCTGCTACACTGCCACATCGATGATCACATTCGCTCTGGCATGGAGACCACATACACCATCAAGGCCAGGACAGCTCAGGGCAAGACAGTCTTTACTCATCATCTCTATTCTTTGGTTAATACAGTGTCACATGTTCACTGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16553 lncRNA upstream 62449 19161582 ~ 19161812 (+) True G13364
TU16530 lncRNA upstream 118733 19091241 ~ 19105528 (+) True G13342
TU16531 lncRNA upstream 120301 19091241 ~ 19103960 (+) False G13342
TU16508 lncRNA upstream 397730 18783448 ~ 18826531 (+) True G13323
TU16472 lncRNA upstream 750572 18419017 ~ 18473689 (+) False AMCG00016407
TU16613 lncRNA downstream 18632 19255725 ~ 19255932 (+) True G13411
TU16617 lncRNA downstream 25006 19262099 ~ 19262412 (+) True G13415
TU16666 lncRNA downstream 140907 19378000 ~ 19442114 (+) True G13458
TU16699 lncRNA downstream 220956 19458049 ~ 19462968 (+) True G13490
TU16700 lncRNA downstream 226388 19463481 ~ 19463953 (+) True G13491
AMCG00016406 mRNA upstream 70501 19146360 ~ 19153760 (+) True AMCG00016406
AMCG00016408 mRNA upstream 133633 18791923 ~ 19090628 (+) True AMCG00016408
AMCG00016405 mRNA upstream 461614 18703867 ~ 18762647 (+) True AMCG00016405
AMCG00016412 mRNA upstream 560897 18663002 ~ 18663364 (+) True AMCG00016412
AMCG00016411 mRNA upstream 588455 18628428 ~ 18635806 (+) True AMCG00016411
AMCG00016416 mRNA downstream 2094 19239187 ~ 19251854 (+) True AMCG00016416
AMCG00016415 mRNA downstream 79735 19316828 ~ 19322281 (+) True AMCG00016415
AMCG00016421 mRNA downstream 87487 19324580 ~ 19325707 (+) True AMCG00016421
AMCG00016417 mRNA downstream 102733 19339826 ~ 19362470 (+) True AMCG00016417
AMCG00016422 mRNA downstream 201500 19438593 ~ 19444885 (+) True AMCG00016422
TU16114 other upstream 2102329 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 2738258 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 2738258 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 2739113 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 4785655 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 4842924 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 5297925 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 5770869 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 5896105 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 5913390 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile