RNA id: AMCG00016414


Basic Information

Item Value
RNA id AMCG00016414
length 3320
RNA type mRNA
GC content 0.46
exon number 15
gene id AMCG00016414
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19184938 ~ 19205594 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTTCCACAAACCAACGTGTGGCGCTAGGATTACTGAGGATATTAACTGccgaaacattttgtttgtgttttttttattacatggATTTATGACAAACTTTCCTGGTtaacattttgttatatatttttgtgacaGTATGACAGGGGCATGTTTTAGAACTCAATTAGCTGGACAGGAGAATGACAGTTTGTAGTTCATACTAGTAGGTGGTATGTAAgtcataaatcattcaaaaatataGTTTCACAGAACGTGTGGAAAcacaaatgtgatttttgttgAACTTATTGTTCTTTGTTTATGGAGTTATAATCAGTAATTCAGTCTGGGTGTGGatgtataatacaaaaaaatataaaattagacCTAATATAATAATCTGTATTTTCAGGTAAAAGATGCCTGTCAACATCCCTGGACTGATATCTgtacttgtgttttatttggtcATTCTCGCCGTGGGAATTTGGGCTTCTAGAAAGTCCCAAATAGAAGAGAAGAAATGCCCAGGAAACAGGAGCGAAATCTCCATGGTCGGAGGGCGAAATATGAATATTGTCACTGGGATTTTTACAATGACAGCAACATGGGTTGGAGGAGGATACGTTATAGGGACGGCAGAAGCAGTTTACGTCCCCACACTTGGCCTGATCTGGGCTCTGGGGCCTTTAGCCTATGTAATTAACTTCATTGTTGGTGGTACCTTTTTTGCCAAGCCCATGAGAGAGAAGAATTTTGTGACAATGATGGatccatttcaaataaaatatggaaaCGCAGTatcaagtttgtttttaatacctGCATTTATAGGTGATTTACTATGGGTAGCATGTATTTTGGGTGGTTTAGGAGGAACAATGAGTGTTATTCTGGACATGTCTTCTATGCACTCAGTCTTCATTTCCACCGGAGTAGCCATTTTGTATACACTGCTGGGAGGCCTGTACTCAGTGGCGTATACCGATGTAATCCAGCTGATTTTTATGGCTATCAGTCTGGCAGTTTGTGTTCCATTCGTACTGATGAATCCAGCATCCTCAGGCATTACATTCACGGCTACTCATGAACTGTTTCAAGCTCCCTGGCTTGGGAAACTGGAACTGAGAGACTTGGGCAAATGGATAGATGACCTTTTGCTTCTGTCTATAGGAGGATTGTGCTATCAGGCCTTCTTTCAGCGAATTCTGGCCGCTGCCTCACCCTCTCACTCCCAAATCATGTGCTACGCTGCCGCAGTCTTCTCCGCCAGCATGGGCATCCCTTCAGTGCTTATTGGAGCCGTAGCCGCATCAACAGACTGGAACCAGACCAGCTATGGTTTGCCGACTCCATTTGAAAAGGGTGAGGGCGGTAAAATCCTTCCCATCGCTCTGCAGCATCTCTGTCCCCCCTTTGTCTCCATCATTGGCATCGGAGCCATCGCGGCTGCCGTGATGTCATCAGTCGACTCTGCCATGCTGTCCTCTGCCTCCCTTTTTGGACGAAACATCTACAAGAGCATCCTTCGCAAACAGAGTGCCAGTGTGTGAAGATGGCCGTTGATATCCCTGGTCTGGTAGCCGTGATCGTCTTCTACGTCCTCATCCTCATCACTGGCCTCTGGGCCGCAAGAAAGTCCAAGAAAGAGGAGAAGAGATGCACAGGGAATAAGAGTGAGATCACAATGGTTGGAGGCCGCAACTTGAATGTGTGGGTTAGCAGTTTCACCACCACAGCAACATGGGTTGGCGGAGGCTTCATCTTGGGGACGGCAGAAGTTGTCTATCTACCATCACAGGGCCTAGTCTGGCTTGTTGCCCTGATAGGATTTTCTCTGAGCTTGATAGTTGGTGGACTTTTCTTTTGCAAACCAATGAGAGGAAACAATTATGTCACAATGATGGATCCTTTCCAAATTAAGTACGGGAACACACTGACCAGCATACTGTTCATTCCTGCACTGCTGGCTGATGTCTTCTGGGTAGCCTGTGTCCTGGCTGCTTTAGGAGGAACCATGAGTGTAATACTGGATATATCCTCTTTCTACTCCGTCATCATCTCGGCTGGCGTAGCTATATTATATACTCTGCTGGGAGGGCTGTACTCTGTAGCCTACACCGATGTAATCCAACTGGCCTTGATGTTCTTTGGTCTGTGGCTTTGTATCCCCTTCACTCTTATGAGCCCAGCATCTGCAGATATTACTTACACAGCTGTGAACACACTGTACCAAACGCCATGGTTGGGCAACATTGAACTGAGGGACGTGGGGAGATGGCTAGATGACCTTCTACTAgtgACCCTAGGTGGAATTTGTTACCAAGCTTTTTATCAAAGAATCCTGGCAGCAGCTACCATCACTCAGGCTCAGGTCACATGTTATATTTCATCGATTATCTGCTTTACTTTGGGCATACCTCCAGCGATCATTGGGGCTGTGGCAGCGTCAACAGACTGGAACCAGACAAGTTACGGTTTGCCCACGCCGTTTGAGAAAGGAGAAGCTGGTATGATTTTGCCCATCGCTCTGCAGCAGCTCTGTCCTTCTTACATCTCCATCGCAGGGATCGGAGCCATCGCCGCCGCCGTCATGTCATCAATAGACTCGGCACTGCTGTCCTCCGCCTCCATGTTTGCACGAAACATCTACAAGAAGATCCTCAGGAAGAAAGCGTCCGAGTCCGAAGTGCTCATGGTGGTGAAGCTTTCCGTCCTGCTCTGTGGGTCGACTGGAATGGGCCTGGCAATGACAACGTCCTCAGTGTACATGTTCTTCATGCTCAGCGGGGACATGATGTACACTGTGATGTGCTCCCAGCTCCTCTGCATTCTCTTCATACCCAAGTCGAACGCCTATGGTGCCAGCGTGGGGTTTGTGGTGGGGCTGCTTCTGAGATGTTTAGCAGGAGAACCGGTACTGAGAATCCCTCCTGTGATCCACTTCCCAGGCTGCAGGCTGGTGAACGGCGTCTACGTACAGTTTTTCCCCTTCCGAACCGTGTCCATGCTGATTTCTCTGTTGTCCATTGTGGTCATCTCCTACCTGACTTCCTTCCTGTTCGACAGAGGCCTGCTACGAGAAGAGTGGGATGTTTTCAACGTCAAGGAGAATAACAGCGTGACCCTCAAAGATGTGGCTCTGAAGGAACTCACAGAGGAAAGCACCCTGAACTCCCCTGTCACCAGTAAAGAGGACGTTCACATTCTGGAGTGAAGgatacactgaaacaattgttCTGTCACATCTGTTTTTATGGTTCTTTATAAAGATGctgtactaaataaataatgtttctggCTAAATAGGAAGGAAAGTCAGTTACAGTCCTATTCCCC

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16555 lncRNA downstream 96306 19088224 ~ 19088632 (-) True G13366
TU16528 lncRNA downstream 107115 19077368 ~ 19077823 (-) True G13341
TU16525 lncRNA downstream 126265 19058405 ~ 19058673 (-) True G13339
TU16520 lncRNA downstream 282962 18826194 ~ 18901976 (-) True G13334
TU16425 lncRNA downstream 1019168 18162787 ~ 18165770 (-) True G13254
TU16615 lncRNA upstream 51044 19256638 ~ 19256919 (-) True G13413
TU16616 lncRNA upstream 52729 19258323 ~ 19258557 (-) True G13414
TU16865 lncRNA upstream 797555 20003149 ~ 20004940 (-) True G13615
TU16939 lncRNA upstream 1110148 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 1262652 20468246 ~ 20513404 (-) True G13762
AMCG00016410 mRNA downstream 23210 19155334 ~ 19161728 (-) True AMCG00016410
AMCG00016409 mRNA downstream 41420 19109142 ~ 19143518 (-) True AMCG00016409
AMCG00016404 mRNA downstream 145434 19025838 ~ 19039504 (-) True AMCG00016404
AMCG00016403 mRNA downstream 170189 19006083 ~ 19014749 (-) True AMCG00016403
AMCG00016402 mRNA downstream 283357 18897556 ~ 18901581 (-) True AMCG00016402
AMCG00016419 mRNA upstream 71704 19277298 ~ 19279668 (-) True AMCG00016419
AMCG00016420 mRNA upstream 76108 19281702 ~ 19316677 (-) True AMCG00016420
AMCG00016418 mRNA upstream 160490 19366084 ~ 19375596 (-) True AMCG00016418
AMCG00016424 mRNA upstream 172406 19378000 ~ 19406939 (-) True AMCG00016424
AMCG00016423 mRNA upstream 221861 19427455 ~ 19437740 (-) True AMCG00016423
TU16556 other downstream 79557 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 2323759 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 2323759 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 2323759 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 4392969 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 929603 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 4249498 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 4493555 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 5105443 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 5105443 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile