RNA id: AMCG00016416


Basic Information

Item Value
RNA id AMCG00016416
length 3353
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00016416
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19239187 ~ 19251854 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaaaagtCCCTCCAGTGCTGGACAGGCAGCCACACAGCGCGGAGATGCCAGACCTGCCCCGGCGGTCACTGCTAGCGAGGGCTTAACTGCAAGAAGCTGGGATGCACATGGAGATCAAACTCACTTGATCACTTTCCAGAGTTAACAAAACGAAACCGCGGGCGGAGAAGACGGAGCCCTTGTTTTGATCTTGGCAGACGATGCGGGTGTAAGAGCCCAGGCCCCGGCAGCCCGATTCCGAGACGAGGATCTTCTTGGGCACCGAGCAGGACAGCCAAGGAAGCCATGGCGATTGCACATGTAGCCACAGAGTACGTGTTCTCCGATTTCCTGCTCAAAGAGCCGTCCGAGTCCAAATACAAAGGCGTGAGACTGGAGCTGGCGGTGGACAAGATCGTCACTTGCATTGTGGTCGGGCTGCCTTTGTTGCTCATCTCCCTTGCCTTTGCTCAGGAGGTGTCCGTGGGCACCCAGATCAGCTGCTTCTCCCCAAGCAATTTCTCCTGGCGACAGGCTGCCTATGTGGATTCCTTCTGCTGGGCcgctgtgcagcagcagcacttgTCCCACAGCGACTATGGGCGTTTGCCACTCTGGCTACACAAGTTTTTTCCCTACATCCTCCTGCTGGTGGCCATTCTCATGTACATCCCAGCCTTGTTCTGGCGATATACTGCAGCTCCGCACCTCTTCTCTGACCTCACCTTCATCATGGAGGAGTTTGACCGCTCCTACAACAGCGCCATCAAGCTGGCCAAGAGCATGGCCACCAATGGGGTCCTGGACTCCAGCACTGCCCCTCCAGACACACGCAGCTCCCTGGATCTGACTGAAGGTTATTTTAAGTACCCGTTAGCTGAGAACTATCTCAAGACAAAGAAGGCGTCCAAGGGTCTAATAATCAAGTACCTCATCTGCCGTACCATGACTTTTCTCATTCTTCTATTCACTTGCATATACCTGGGGTACTACATCAATCTCGCCGCGCTCACGGACGAATTCAAGTGCAACATTCGGACCGGAGTGCTCAAAAACGATAGCCTGATCCCTGACTTTCTCCAATGTAAGCTCATTGCGGTTGGCGTATTCCAGCTCCTTAGCTATATCAACTTAATAGTATATGTCATAGTGGCACCTGTCATTATCTACACCACCTTGATTCCAGTCAGGCAGAGCACGGAGTTCCTCAAGGCCTATGAAAGCTTGCCCACCTTTGGCTTCATGGACACCTCATCTAAGTTCTATAGTGACTTCAGTTTGTACTTACTCTTCATGGAGGAAAACCTCAGCGAACTGAAGTCCTACAAGCGCCTGAAAGTCCTAGAACACGTGCAGCAGAATGGCGAGGGGAGTCTCGATATAATGTACCTCTTGAGAAATCTTGGCCAGGTGAAGACAGATGCTGTAGATGGCAAGATACTCCATCACCATAGCAACAACAAAGCAGCCAgattagaaaaggaaaataacgcAACTGAACTGAAAGAGTTGTCCGACTTATCATTGGAAGACGGACTCAAAGATAAAAAACTCAGGGAGGAGAAAGCGGTACGACAGAGAATGCTGGATTCCACCTCCACGTGTTAACGGCAAGTTTCTACTCTCAACATGTTGAAGCTGGATGATGAAGAAAGACTGTCCAAGACTGCTTCATCCAGCCCGGAATTGGCACCGGAATTACGGTTGGACAATTTTTGCGGTAGAAATTTAGAATCTCGACGATTCTGAAGACAAGGACACCATTCAACATGCGGTACTGATGGCAACTCTCTTTTGGTAGCTCAGATTTAATATTCGTTTACagatatttttatgtaaaatgtattggcTATTgatcttcaaaatattttctgcaAATGGGTCTGCAtgttttgtcttgtcttgtgaTCTTCCCCCCCCCTACTATCtttttaagtgatttaaaatacactgcTGTGTGGTACACCAACATACCTCAGGTCAGATCTTCAAAACGTGCTTTTCTTGTTCACcgaaaaatatgaaatgtgaaaCACCACTGAATGCTTGAAGATATTACACTCGGCATAAGGACATTAGTTCTGAATTCTGGTTCTGCATGTGGTTAAACCTCACTCAGGATATGAGGGCCTGCTCATGCTTGGTGTCAGTGGTAAGGTTATGAATTGCGGTGAGCTGACTTCCGTTGAAGCTGGAAGGTTGAAGGTGTTGCATGGATTCACGTAGACATGCCTGCGGTTGGGTTGTTTTGCTGTaacaatgaacacaaaacactgaGCCTGAGAATTATGTATTTAGAATTGAAAATGACACTGTTAGAATTTGGCTTCTAGTAAAACACCTCAGGAAATGTGTTTGGAAGTGACCTTAAAATGTGCAGCGCAAGGGTTTCTGTATTTCTTCACAGAAGAAGATAAGGGCCCATGCAGTGGCAGTTAAGCTGTATACACTTGAAACTGAATGGACCCGTGAgatttgattttacatttatcATGGCTTTTGTGACTGAAAGCTTTTATGATATTTGAGAACAAAACcgattttctttaattttctgtgattttattattcGTACTATCAAatgctttcattgttttttgtggatGTTGTAGATCATTtcacctttaaaacaaaaatcaaactgCCAAAAAATATTTCGTTCTTTGTCAGAGAAGCCTTAATTTCTTACTTTATAGAACGTATCCAAtgctgcttttgtattttttttttgtagatacGTTTCTTAAAAAAATTTGCTATTTTTTACACTTTCTATCTAGGCCTACATTGCTTGTTAGAGTTTCAGACCACTAGATTAAAGCTGAAACAATTAGATGTTCTCAATCGAAGGCTGTGTGGGAGACCGTCACCCTATTTGTTCGTAGTTCTGAATGAAAAGGGTAATTTTACTTCTCATTCACGGAGTtggcagtgatttttttttttcaagcagtCATGATTAAAACTAAAGCAATCTAAAACTAAAAGTGCTATCTTAATTAACTTTCCTTGGGCTTCCAGTTTCTAATTGGATGCATGCTGTACCAGTACTTCTTGCAGCCAACATAAAGAAGACTGAATAGAATGAAAAACCGATGGAATGCCAAAGAAAACTGACCAATGTAAATGATTTTGCGAGTTGTACAGTAgatgtatatagtgtatatacagtggTTTCCATGTGTTTGCACTCTTGCTGGTGATGTACAGATGTATAGCTGCTAGTGCTCACATTGCTCTGAATTTAGAATGGAGTGCTATTGcagttatttaaattgtgtcCATTACCATCTATGAGAGAATTTGGGGATTTTAATTTATACttctatgcatttttttttttttttttttttttacttttatggaTTTGTCC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0051049 regulation of transport biological_process
GO:0032587 ruffle membrane cellular_component
GO:0022832 voltage-gated channel activity molecular_function
GO:0055077 gap junction hemi-channel activity molecular_function

KEGG:

id description
K03443 PANX1; pannexin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16553 lncRNA upstream 77375 19161582 ~ 19161812 (+) True G13364
TU16530 lncRNA upstream 133659 19091241 ~ 19105528 (+) True G13342
TU16531 lncRNA upstream 135227 19091241 ~ 19103960 (+) False G13342
TU16508 lncRNA upstream 412656 18783448 ~ 18826531 (+) True G13323
TU16472 lncRNA upstream 765498 18419017 ~ 18473689 (+) False AMCG00016407
TU16613 lncRNA downstream 3871 19255725 ~ 19255932 (+) True G13411
TU16617 lncRNA downstream 10245 19262099 ~ 19262412 (+) True G13415
TU16666 lncRNA downstream 126146 19378000 ~ 19442114 (+) True G13458
TU16699 lncRNA downstream 206195 19458049 ~ 19462968 (+) True G13490
TU16700 lncRNA downstream 211627 19463481 ~ 19463953 (+) True G13491
AMCG00016413 mRNA upstream 2094 19224261 ~ 19237093 (+) True AMCG00016413
AMCG00016406 mRNA upstream 85427 19146360 ~ 19153760 (+) True AMCG00016406
AMCG00016408 mRNA upstream 148559 18791923 ~ 19090628 (+) True AMCG00016408
AMCG00016405 mRNA upstream 476540 18703867 ~ 18762647 (+) True AMCG00016405
AMCG00016412 mRNA upstream 575823 18663002 ~ 18663364 (+) True AMCG00016412
AMCG00016415 mRNA downstream 64974 19316828 ~ 19322281 (+) True AMCG00016415
AMCG00016421 mRNA downstream 72726 19324580 ~ 19325707 (+) True AMCG00016421
AMCG00016417 mRNA downstream 87972 19339826 ~ 19362470 (+) True AMCG00016417
AMCG00016422 mRNA downstream 186739 19438593 ~ 19444885 (+) True AMCG00016422
AMCG00016432 mRNA downstream 506473 19758327 ~ 19799814 (+) True AMCG00016432
TU16114 other upstream 2117255 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 2753184 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 2753184 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 2754039 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 4800581 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 4828163 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 5283164 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 5756108 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 5881344 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 5898629 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile