RNA id: AMCG00016418


Basic Information

Item Value
RNA id AMCG00016418
length 2406
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00016418
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19366084 ~ 19375596 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAAAAGCTTAAATGTTACAATGAACAATCTCTATAGTATAATGATGTTTAAACGATTACTGTCAGTTCTATCGAATGTGaatgtttattgaaattaaCACATAAATCTCCACCTGAGACTATTCTGTAACCACGCGTATTCATTGTTACAAaacatccaaaaataaaataaaaacgcgTTTAAAAAAATCGAAGCGGTCTTACAACGCTGCCTAGGTTTATTCTGTCCTGTGTGGCACTCCGTAGATTTCGCGCGCATTGCTCCATGGGATACTGGATGTTTCTACAGTATTAGCGTCTGGGTTCAGtaaATTGTCCACTGGATTTTCAATTGAGTAAAGATGACTACAGCTGCCAGACCAACGTTTGAGCCAgcgagaggagggagagggaaaggggaaGGAGACCTCAGTGCCCTGTCCAAACAGTACTCCAGCAGAGACTTGCCATCTCATACCAAAATCAAATACAGACAGCCTACCCAGGATGCCCCCGAGGAGGTGCGTGCCCGTGACTTCCGCAGAGAGCTGGAGGAGAGGGAGCGAGTTGCTGTCCGGGACAAGACCAGGGACAGGCCCGCCAGGGagcACACCACTTCATCATCCTCGTCGTCCAAGAGGCCGCGCTTAGACCAGATTCCCGCAGCCAACTTGGATGCTGATGACCCCCTGACCGATGACGACGAGGAGGACGAGGACTCTGATGAGGACAGTGACGATGACACCGCGGCTCTGCTGGCCGAGCTGGACAAGATCAAGAAAGAACGTGCTGAAGAGCAGGAGCGCAAGGAGCGGGAGCAGAAGGCCGAGGAGGAGCGCATCCGCATGGAGAACATCCTCAGTGGGAACCCCCTGCTCAACCTGGccgggcagcagcagcagcagcagctggtaCAGGCCCAGACCACCTTCAGCGTCAAGAGAAGGTGGGATGATGATGTGGTATTTAAGAACTGTGCCAAGGGTGTTGACGATTCAAAGAGGGAGAAACGATTTGTGAACGACACCCTGCGATCCGAATTTCACAAAAAGTTTATGGAAAAGTACATCAAATAATGTTAATGGTGCTTTTATCACAGGCATTGTGTGTTTGGGTTGCTCCATTTTGCTGAGGAAAGGGTCCTTGTGTTTAGTGGGTGGGGTTCTGTATGGTTGAGGTTAACCAGGCAGAACACTGCTTTTTCCCCTTTAcaatttgtttgctttcttcagtctcatttgaaatgtattgtgtaCAGTCAAACTCTCACTGATAATTTAAGGATCTattgattaaaatatgcattttatttcctggGGATATACCTGTAACACAGGGACTCAAATGTACTGTCAGAATTCTTGCATTACGTTATATGCTTGTCTCTAGGAGCCATGTATAAAGCTTACATATAGCGATAACATTTTGTAAGACACTTCCAGGTTTGAATTTATCATTGATcgttgttttctttcatattttatataaaagctGTTCATCAAAAAACGgttgtggtttaatttttttcgtaaggaaaatgtttaaattttgaAGTTAACTGTACAAACTGGTCTTTATtcagtaattttattttaattaatgcagtTGCTTATTACTATACTTGTACTCACCTAAAATGTGCAGTGCTGATATCTTGCACAAATTTGGTAGCATGAAAAGATCCTTCCtttttgccattgttttttatttttttatttgtagagTGATTTATCAGTTACATTGTTATGAAGCACATTTAGCCTTCACTCTCTGAACCCTGGTTATAACCACAAGTGTATGATTATGAATTATGGCTTAACTGGATAAGCATATAATTTCTGCTGCAGATTTAAgaggaatacaaatataattaagtttttttATAACGGGAGCAATAGTTAGTAACCCATCAATGGAGTTTGATTATATGCTTTCTGGGATTTTCGTTTTTTCCATCCGTGCCATATGGCTTAATAAAGACACTGACTGCAATTTGGGGACGTTATAAACATGTCTCTCCAAAATCTGCTTTTCAAGACTTACATTTTTCTATGAGTGTGTGCTTGCAGGTTCATCCGCGTGAGTTTCAGGTCTCTCTGGTACCCCTTGACCGATCTGTACTTCAGCAGTTTTCCTGGAATTCAGAGAACCTGTCAGCAGCAACACTGTGCTGACTGCTGCAGAAAAGCAACAGGACATGTGGTGTGCAGGTGAAAGTGAAGGATGCCAAAGAAAACAGTGTTCTCCATAGAATGCTCTGCCCTGTTCCAGCAGGACTAGCTTTATATACCACTGTTCAGTCTGATGAATATGCCTGCTTCAGAGTGTATCTTAATTGTTGGTGTTTTCAGACCAGTAAACTTTTTCTCAGAAGGTGAAATGTTCTGAATTGTGTGAGACATTCCtttattcaaaaacataaaagaa

Function

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
K12863 CWC15; protein CWC15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16616 lncRNA downstream 107527 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 109165 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 112670 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 277452 19088224 ~ 19088632 (-) True G13366
TU16528 lncRNA downstream 288261 19077368 ~ 19077823 (-) True G13341
TU16865 lncRNA upstream 627553 20003149 ~ 20004940 (-) True G13615
TU16939 lncRNA upstream 940146 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 1092650 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 1111285 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 1219733 20595329 ~ 20598765 (-) True G13789
AMCG00016420 mRNA downstream 49407 19281702 ~ 19316677 (-) True AMCG00016420
AMCG00016419 mRNA downstream 86416 19277298 ~ 19279668 (-) True AMCG00016419
AMCG00016414 mRNA downstream 160490 19184938 ~ 19205594 (-) True AMCG00016414
AMCG00016410 mRNA downstream 204356 19155334 ~ 19161728 (-) True AMCG00016410
AMCG00016409 mRNA downstream 222566 19109142 ~ 19143518 (-) True AMCG00016409
AMCG00016424 mRNA upstream 2404 19378000 ~ 19406939 (-) True AMCG00016424
AMCG00016423 mRNA upstream 51859 19427455 ~ 19437740 (-) True AMCG00016423
AMCG00016425 mRNA upstream 70958 19446554 ~ 19455857 (-) True AMCG00016425
AMCG00016426 mRNA upstream 84697 19460293 ~ 19498100 (-) True AMCG00016426
AMCG00016428 mRNA upstream 283820 19659416 ~ 19698145 (-) True AMCG00016428
TU16556 other downstream 260703 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 2504905 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 2504905 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 2504905 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 4574115 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 759601 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 4079496 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 4323553 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4935441 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4935441 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile