RNA id: AMCG00016429


Basic Information

Item Value
RNA id AMCG00016429
length 2177
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00016429
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19875056 ~ 19879725 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGGCCGGAAGTCAGATGTCAGAGCACAGAGCCGCTGTCATGTGATAAGCGATCCGCGACTCGCAGAGGAAAAGGTAACAAGAAGCAGGAGGGAAGTTGCGACGTCAGGCCCCTACGCtggatttctttctttccttattttatttacttggaAGAAAAGCTGGAGATTGTCTTCGGCTCGCTTGGCAGAGAGCCGAGAGCCCCCAGCGGACATCATGGGATGCTGTTACAGCAGCGAGTCTGAGCCCCAGGAGCAGGACAGAAATGAGCGGAAGCCCTTGATCCCCCATCCCAACCCGGATAGCAAACCGACCAATGGAGCAGAGCGCAACTCGGCCAGCCTTCCCTCGGCGCGGACAGATGAGCAGGCCCTTCTCTCGTCCATCCTCATCAAGACGGCACAGTACGTACGCAGCGTGGAGAACAGACCTCGCCTGGGCCTTGAAAGAATATAATTGATGTCTCTGCCGCAGACTCACAGGGGATGGAGCAGCATGAGTACATGGATAAAGCTCGACAATACAGtaCGAGACTGGCAGTCCTTAGTAATAGTCTGTCACAGAAGAAACCCGCACCTCTGCCCTCACTAACTAGCCAGCCCCACCAAGTGCTTGCCAGTGATCCTGTGCTGTATTCGGACATACAACAGgTCTCAAAGATCGCTGCTTATGCTTACAGTGCAATTTCACAGATAAAAGTCGACGCAAAAGAAGAATTGGTTGTGCAGTTTGCTATTCCCTGATCAACCGAGGGCTGTTCTCTGTCCCCGTTCcacctgtgtgtctctctctttctctctccatccctctccctcccataTGTCCCTAACCGAACCATTCATCTTTGTCTCTGTCCAAGATATTGGCAATGCCACCTTAAAGCATCAACCGCTGAGGACTTGGAAACAAAACTCTCAAAGAATAGGTTGACTCGTACCGAACAAGAACTTTTAAAGTGTGTAAATGAATCTCTCATGTGACCTGTGAAGGAATTTGAGATCCTTGCTGTTCCAAGTGCATTATTAAGAAAGTGTTAAAACTATGGCTTGGATTTTCActatttcagcatttttatgattCTTTTTAATGGGTAGAGCTCCATTAATGAATTGCCACCATGAAAAGTTTAACATAAAGGCCACCTGAGAATTTCTAGAAAACCCGTAGCTCAGAATAACTGGAGAGAGTGCATGGTTGTGCAGTGGGTTAATTTTGTTACTTTATATCCATGGAACCCATTGACTAAATCCAGTTAAGGTCCAAAAGGCTATTGGGTTTGGAAAACCTCAGCCTAGCCTTACATTGTCCACAGATCCTtcacacaacactacacagtTTGTCACAATGCAGAGCCTCTGCTCCAAAGGCATAGAAAGCAATGGAAGGGGTACATTTTCAAGTCAGGACCATTGAGATTTATTGGCAGAGTTTTTATGTAAAGACTCACTTAGTGCTACGCCCTTTGTGTCTCTGAGATTTGCTGTTGCCATTTCCCTTGCAATGTATAAGCACTTGAAATTCACTGGCacccagtttaaaaaaaaaaaaaaaagcttcagaaaagaGTTTTGTGTCAATGCCTTTAATGTACAGATTATATGGTGTAGGGGCAAGAATAATGTTCTGAATGAGCCTCCCATTGTACAGTTATAATTTGTGTGTTGCAAACCTGTTGGTTATCACAAAATACTGTTGAGAGTGGAAGAAATGCAGGAATGACAAAGTCACAAATCAACCAAGCCCTagtttttattaagttttattaatcacacttttcttgctttttaaaggtaaaattatatatgtttggAAGACTGCTAGGACTGGTCATTAAGAATATCTGATTCATGTGTTTCATTCGCCCCAGTGTTGGAGAAAAAATGACTAGTGTATTTTGAAGTCATGTTATCAGAAAAGacacctgtatttattttctttttaatgtatttatggtcactttatatttttcttttctggtgtGAGCAGATCTCTAGTGCAAAGCCAGGCACTTTCATGGGTTTTAAAGGGATTAACCTTAGGGCTGTAAAACAtcaacagacattttatttttcgcTTCTTGCAGCGTGctaatagtattttttgttttgttttttacttaaatgtataatactACCTGAATTACATTGTTTCTTTCTTAGGCTAGTACCAAAAAAGcg

Function

GO:

id name namespace
GO:0043410 positive regulation of MAPK cascade biological_process
GO:0007040 lysosome organization biological_process
GO:0042632 cholesterol homeostasis biological_process
GO:0001919 regulation of receptor recycling biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0071986 Ragulator complex cellular_component

KEGG:

id description
K20397 LAMTOR1; ragulator complex protein LAMTOR1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16709 lncRNA upstream 309944 19564800 ~ 19565112 (+) True G13500
TU16705 lncRNA upstream 362890 19511913 ~ 19512166 (+) True G13496
TU16704 lncRNA upstream 404600 19470175 ~ 19470456 (+) True G13495
TU16703 lncRNA upstream 404958 19469635 ~ 19470098 (+) True G13494
TU16702 lncRNA upstream 406268 19468580 ~ 19468788 (+) True G13493
TU16825 lncRNA downstream 135219 20014944 ~ 20018086 (+) True G13593
TU16833 lncRNA downstream 151768 20031493 ~ 20032916 (+) True G13599
TU16913 lncRNA downstream 339718 20219443 ~ 20256020 (+) True G13659
TU16917 lncRNA downstream 407350 20287075 ~ 20289834 (+) True G13662
TU16940 lncRNA downstream 439292 20319017 ~ 20319339 (+) True G13681
AMCG00016431 mRNA upstream 6038 19866278 ~ 19869018 (+) True AMCG00016431
AMCG00016430 mRNA upstream 60446 19811402 ~ 19814610 (+) True AMCG00016430
AMCG00016432 mRNA upstream 75242 19758327 ~ 19799814 (+) True AMCG00016432
AMCG00016422 mRNA upstream 430171 19438593 ~ 19444885 (+) True AMCG00016422
AMCG00016417 mRNA upstream 512586 19339826 ~ 19362470 (+) True AMCG00016417
AMCG00016438 mRNA downstream 6033 19885758 ~ 19898268 (+) True AMCG00016438
AMCG00016439 mRNA downstream 32115 19911840 ~ 19938673 (+) True AMCG00016439
AMCG00016441 mRNA downstream 118707 19998432 ~ 20005939 (+) True AMCG00016441
AMCG00016451 mRNA downstream 128272 20007997 ~ 20009859 (+) True AMCG00016451
AMCG00016450 mRNA downstream 130571 20010296 ~ 20014909 (+) True AMCG00016450
TU16114 other upstream 2753124 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 3389053 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 3389053 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 3389908 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 5436450 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 4200292 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 4655293 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 5128237 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 5253473 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 5270758 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile