RNA id: AMCG00016432


Basic Information

Item Value
RNA id AMCG00016432
length 2779
RNA type mRNA
GC content 0.57
exon number 16
gene id AMCG00016432
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19758327 ~ 19799814 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGTTCACAGGCGTGCTGTGGAGAGGCGCTCGCTGCCGGTCAGGACGCGCTGGGCTGCCGGGGGAGAGGTGCTGTGCTGGGCGGTCAGGACGCGCTGGGCTGCCGGGGGAGAGGTGCTGTGCTGGGCGGTCAGGATGCGCTGTGCTGCGCTCTCTCCAGGCCGGTGCTGGCCCGGTGCCGGAGGTGCTGCCACCTCAGTGCCCCTGGGCCGGGGATGCTCAGCACCAGGAGGGTGGCGATCGCGCTTTCTGACGACAGAGCCCTCCACGGCTGTGCTCGCAGCTCCGCCCGGCTCACGATACAGCCAGGCGCCTGCGGGTCCAGTAATGTCCCCCTGCGTCCGCAAGAGCAGCGCACGGCCACCAGGTGGCCCCCAACGTCAGACGTGGGACACCGCGACACCTCTGCTGCCGCCCGAGGGCGCCCTGACGGCGGGCACGGCGGGGGAGGCGGCCGGCGCAGGGCGGGCCTTGGCACGGTCGCGTCCGCAGGTGTGCTCTCGGCGGCGGCGCTGGCCTACTGCCTCAAAAGAGAGTCCGAGTGCACAGGAGATTCTTTGCTGGAAGCAGCCCGGTCCAATAATGCCCAGGAAGTCACAAGTGTGGTGACGGCTCTACTGgcagccggagccgatcccaaCCTGGGGGACGAGTTCAGCACGGTCTATGACTTCGCCAGGGAGAAAGGGATCCACTCTCTTGAAGTGCTGGTGACCAGAGAGGACGAGTTCAGCAACCGCCTCAACTCCCGTGCCAGTTTTCGCGGCTGCACCGCGCTCCACTACGCCGTCCTGGCTGATGACCTGCGCAGTGTGAGGAAGCTCCTGGAAGCAGGTGCCAACCCCCTGCTGCCCAATGATATCGGGCACACGCCAGCAGCCTACGCCAAAGAGGGGGAGCTGCTGAAGCTGCTGAAGGATTGGGAAGTCAAGTTTCAGGAGGTGCAGCGGCGGCACGAGGCGGAGGAGCGGAGGAGATTCCCCCTGGAGCGGAGGCTGAGAGAGCACATCATCGGACAGGAAGGCGCCATCAGCACGGTGGCTGCAGCAATACGGAGGAAGGAGAATGGCTGGTACGATGAAGAGCATCCCCTAGTCTTCCTCTTTCTGGGCTCATCTGGAATCGGTAAAACAGAGCTAGCCAAGCAAGTGGCCAGATATATGCACAAAGATGTGAAAAAGGGCTTCATTCGGATGGACATGTCTGAATTCCAGGAGAAACACGAGGTTGCCAAGTTCATAGGCTCCCCTCCAGGCTATGTGGGGCACGAGGAGGGCGGCCAGCTGACCAAGCAGCTAAAGCTGTGTCCCAATGCAGTAGTGCTGTTTGACGAGGTGGACAAGGCCCATCCGGACGTGCTCACCATCATGCTGCAGCTCTTCGACGAGGGAAGACTGACAGATGGAAAAGGAAAGACAATTGAATGCAAAGACGCCATCTTCATCATGACCTCCAATGTGGCCAGTGACGAGATTgcccagcatgcactgcagctGAGACAGGAAGCGCAGGAATTGAGCCGAATGCGATTGGCGGAGAATCTTGaTGACGTACAGAAGACAGACAAAATCACCATATCCAAGCAGTTCAAGGAGAATGTCATTCATCCAATTTTGAAGGCCCATTTCAGGAGGGATGAATTTCTCGGTCGGATCAACGAGATTGTTTACTTCTTGCCCTTCTGCCACTCAGAGCTTATCCTTCTGGTCGGCAAGGAACTCAGTTTCTGGGCCAAGAAGGCCAAACAGAGACACAACATCAATCTGCTGTGGGACAGAGAGGTGATGGACCTGCTGGTAGGGGGGTACAACCTGCACTATGGAGCGCGCTCCATCAAACACGAGGTGGAGCGCCGGGTTGTGAACCAGTTAGCAGCTGCCTACGAGCAGGAGCTGCTCCCCGAGGGCTGCACGCTGCGCCTCTCCGTGGACAGCGGGGGGAAGAAAGCAGACTACAGCCATGCCGAGGGCCAGGGTCCCAGCCTGCGCCTGGAGATCGTGGAAGAGGACAGCACCTCCCGCCAGCTGAACATCCAGCCCCCACTCCACCCAGAGGACGTGGCCTTCTCCATCTGAGCCCACAGACGCTGCCCCCATTGCCGCCCTAGAAGAGGAGCCGTCCTTCTGTGTGCGGCTGCCCATCCGCCCCTGCCCCTGCAAGACACTCAGTTAAGGAGCACTACACACGCCGAGCAGCAGCATTTCCACAAGCATCAGGCTTTTGGCATCCCCTTTCAATGTAGTGTCGGTGCAGTGGTTGACGCCCTGTTTGGTTTTACACAAGTCCTGCGACAAGCGCCAGTTCACTTTGTTCAGAAAAGGAAAACTCTCAACCCCAGTCCTCCCAGTTTCACAGCGATCTTGCAGGCCAGTTTATTGCGCCTGTCTCTGATGTCTGTTGGTTTTCTGAAGCTGTTCAGTCTTTGCCAGCTGAAGTCAGTCGTACTGCTTgaattgtgaagtggaaacccATTTAAATGACTGAGGCACCCTCAAGCTGGCAGATTTTCAGGCTTCTGggtgtttattgttttccttccttATTTAGAAGATAAAgatcacaaaaatacataaaagtgtCTTGTGTATTTTTAGACAGGGCAAaggcagaaatgtattttgcgATTGTAGATGTATGTAAATACTGAGGTTTAAAGTTGTGTAGAGGAATATGCGTATTGAGATGGAAacgatttaaattaattcacaacATTAAACGTTTTGCTTTCTCCTTTCGttgttatattataaataaagagATCTCTTCAGACTATATGAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16709 lncRNA upstream 193215 19564800 ~ 19565112 (+) True G13500
TU16705 lncRNA upstream 246161 19511913 ~ 19512166 (+) True G13496
TU16704 lncRNA upstream 287871 19470175 ~ 19470456 (+) True G13495
TU16703 lncRNA upstream 288229 19469635 ~ 19470098 (+) True G13494
TU16702 lncRNA upstream 289539 19468580 ~ 19468788 (+) True G13493
TU16797 lncRNA downstream 75286 19875100 ~ 19879716 (+) False AMCG00016429
TU16825 lncRNA downstream 215130 20014944 ~ 20018086 (+) True G13593
TU16833 lncRNA downstream 231679 20031493 ~ 20032916 (+) True G13599
TU16913 lncRNA downstream 419629 20219443 ~ 20256020 (+) True G13659
TU16917 lncRNA downstream 487261 20287075 ~ 20289834 (+) True G13662
AMCG00016422 mRNA upstream 313442 19438593 ~ 19444885 (+) True AMCG00016422
AMCG00016417 mRNA upstream 395857 19339826 ~ 19362470 (+) True AMCG00016417
AMCG00016421 mRNA upstream 432620 19324580 ~ 19325707 (+) True AMCG00016421
AMCG00016415 mRNA upstream 436046 19316828 ~ 19322281 (+) True AMCG00016415
AMCG00016416 mRNA upstream 506473 19239187 ~ 19251854 (+) True AMCG00016416
AMCG00016430 mRNA downstream 11588 19811402 ~ 19814610 (+) True AMCG00016430
AMCG00016431 mRNA downstream 66464 19866278 ~ 19869018 (+) True AMCG00016431
AMCG00016429 mRNA downstream 75242 19875056 ~ 19879725 (+) True AMCG00016429
AMCG00016438 mRNA downstream 85944 19885758 ~ 19898268 (+) True AMCG00016438
AMCG00016439 mRNA downstream 112026 19911840 ~ 19938673 (+) True AMCG00016439
TU16114 other upstream 2636395 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 3272324 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 3272324 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 3273179 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 5319721 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 4280203 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 4735204 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 5208148 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 5333384 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 5350669 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile