RNA id: AMCG00016434


Basic Information

Item Value
RNA id AMCG00016434
length 774
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00016434
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19869693 ~ 19871302 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTCGCCCGCGATCGCTCTGGCGTTCCTCCCTTTTGTGGTGACGCTGATAATCCGGTACCGCTACTACTTCCTGCTCTTCTACCGGGCGGTGTTGGTGCGTATGGTACAGGACTGCCTAACCAGTCTGACGCGGGAGGAGCGGGCGTTCCAGTACGTGCTGACACATGCCACCCCCGGGGACCCCAACAGCATCCTCGACACCTTCGACCACTGGTGCAGTAAGGTGGAGTACATGAGCAACATCGGACCAAGGAAAGTCCTGGACAGACTCATAGTGGACAATGCCCCTCTGACCGTTCTGGAGCTGGGCACACACTGCGGGTACGGGGCTGTCCGCATTGCCCGCTCGCTGCAACTCGGTGCCAGGCTCTACACCGTGGAGATGGACGAGCGCAACGCTGAAGTGGCCGAGAAAGTCATCCGTCTGGCTGGCTTCGACGATGACACGTTGGAGCTGATAGTGGGGACGTCAGAAGAGGTGATCACCAAAATGAGAGAGCAGTACGGGGTGGAGCGACTGGACTTCGTCTTCATGGACCACTGGAAGCGCTGCTACCTCCCCGACCTTCAGCTCCTGGAGGGCAGTGGGTTGCTGGGCAAGGGCAGCATTATTCTGGCCGATAATGTCATTTTCCCAGGGGCGCCCCATTTCCTGCGCTATGTGAAGAAGAGTGGACTGTACCAATACCGCACCCACCGCGCTACCCTGGAGTACACCCCCGGCATCCGAGACGGCATGGCAGAGCTCACCTACCTCGGGGTTAAGTAA

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0016206 catechol O-methyltransferase activity molecular_function

KEGG:

id description
K00545 COMT; catechol O-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16616 lncRNA downstream 611136 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 612774 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 616279 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 781061 19088224 ~ 19088632 (-) True G13366
TU16528 lncRNA downstream 791870 19077368 ~ 19077823 (-) True G13341
TU16865 lncRNA upstream 131847 20003149 ~ 20004940 (-) True G13615
TU16939 lncRNA upstream 444440 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 596944 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 615579 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 724027 20595329 ~ 20598765 (-) True G13789
AMCG00016436 mRNA downstream 3998 19861454 ~ 19865695 (-) True AMCG00016436
AMCG00016435 mRNA downstream 12189 19817121 ~ 19857504 (-) True AMCG00016435
AMCG00016427 mRNA downstream 111845 19737294 ~ 19757848 (-) True AMCG00016427
AMCG00016428 mRNA downstream 171548 19659416 ~ 19698145 (-) True AMCG00016428
AMCG00016426 mRNA downstream 371593 19460293 ~ 19498100 (-) True AMCG00016426
AMCG00016433 mRNA upstream 1315 19872617 ~ 19874894 (-) True AMCG00016433
AMCG00016437 mRNA upstream 8969 19880271 ~ 19881825 (-) True AMCG00016437
AMCG00016440 mRNA upstream 98290 19969592 ~ 19979924 (-) True AMCG00016440
AMCG00016444 mRNA upstream 134621 20005923 ~ 20007711 (-) True AMCG00016444
AMCG00016445 mRNA upstream 146078 20017380 ~ 20031020 (-) True AMCG00016445
TU16556 other downstream 764312 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3008514 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 3008514 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 3008514 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 5077724 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 263895 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 3583790 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3827847 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4439735 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4439735 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile