RNA id: AMCG00016438


Basic Information

Item Value
RNA id AMCG00016438
length 3021
RNA type mRNA
GC content 0.55
exon number 26
gene id AMCG00016438
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19885758 ~ 19898268 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGCCAGTATCCAACCCAGATAAGGATCCCGACAACAATGACGGTGACTCTGGAGACCCCTGTGGCCTCGCAGTGTCCCGGTCCCGCagagagaagaaggagaagaccGGGCGCAACAGCCCCCCTGTTAATGGAGCCACCCCCTGTTGGCAGGTGGAGGAGTTGACCAGTGTGTACGAGGAGGTGGATGAGGAGCAGTATTCCCGGCTGGTGAGGGAACGGCAGGACGATGACTGGATCATAGATGACGATGGGACTGGTTATGTGGAAGATGGCAGGGAGATATTCGATGAGGATTTGGACGAAGATGCCCTTGACAGAGGCGCCAAAGGTAATTGTACACATGGGAAGAGGGggAAAGCGGGCAATAAAAGTGCTGTGAGTAAAGACAAGAAGAACGACAAGAAGGCGGCCGTTTCCAAACCCAACAGCATTAAGTCTATGTTCATGGCCAgcaatgtgaagaaaaacacagagaaagatgttgACTTGTCCAAGGATGACCTATTGGGTGACCTCTTGCAAGATCTTCATTCTGAGACCTCTCCCATGCTAACTCCACCACCTGTTATTAccctgaagaagaaaaagccaGTCGGGGTTCCACTGAATCCATTCTCCGTCAAGCCTCAAGCCCCTAAGGTATTAGGAATCGAGCctgtgttattttcttcatcTGGTCTTCATCTGCCAGTGAGCTCCAGAGCCCGGCCTACAGCTGCTGCCCCCTCCAGAGCCCTGCCCGAGGCTCGGACAGTAAAGGAAGAACCCCAGGAAGAAGAGGATTCCGCAGCCATGCAGTTCGAGGAGGGGGACTTTGACGAGCCCATGGAGGTGGGAGACGAGGAGGACAGCATTGAGGGGGAAGTGAAAGAGGAGCCAGAACTGCAGGCTGTGGTCAAACCTGAGGTCAAGTCTGAGCCGCCTGAGGATGGCACCCTGCAGCAGAGTGGGGGGGTCCCGGCGGTGTCATGCTGGGAGCAGATGGAGCAGGGGGGAGAGGAGGACTCGGAGCCGGCCCTAGAGGTGCAGGTGGACTCCAGCCGCCTGCCGCTGGTGGAGGGGCCGGATGGAGAGCAGGTCTTCCGCTTCTACTGGGTGGATGCCTTTGAAGACCAGTATAGCCAGCCAGgtGTTGTCTACCTGTTTGGAAAGGTGTGGATCGAGTCTGCTAAGGCACATAAGGTGGGCTGCAATTTCGTGCTCTCTATGTTACAGAAAGTGAACCTGAAGTCTGGCGAAGAGACGGACACCCCAGTGGGCATGATGGATGTGTATCAGGAGTTCAGCGCCATCTCCGAGAGATACAAGATCATGAAATTCAAGTCAAAGAAAGTTGAGAAGAGCTACGCCTTTGAAATCCCAGATGTGCCCTCTCAGTCCGAGTACCTGGAAGTGAGATATTCTGCTGAAATACCGCCACTGCCGTCAGACCTGAAAGGGGAAACCTTCTCCCACGTGTTTGGAACCAACACCTCCAGTCTGGAACACTTCCTGTTGAGCAGGAAGATCAGAGGGCCCTGTTGGCTGGACATCAAAAGCCCTCAGCTGAGCAGCAATTCGGTCAGCTGGTGCAAAGTGGAGGCGGTTGCCATGAAGAGCGACTTGGTCACCGTAGTGAAAGACCTGACTCCTCCCTCCCTGGTCGTCATGTCGATAAGTATGAAGACGGTGCAGAACGCGAAGACCCACCACAATGAGATTGTATCCCTGGCTGCCTTGGTCCATCACAAATTCCCACTGGACAAAGCTCCCCCCCAACCTCCCTTCCAGACACACTTCTGTGTGATCAGCAAACCAAACGACTGCATCTTCCCATATGATTTCAGTGAAGTGGTAAAAAGAAAGGCAAGTGgaattAATGCCAAAGTGGAGATTGCTGCAACAGAGAGGACGTTACTCGGCTTCTTCCTGGCTAAAGTGCACAAGATTGACCCCGATGTCATTGTGggcCACGACATTTATGGATTTGACTTGGAAGTCCTACTGCAGAGAATCAATGTATGCAAAGTGCCTCACTGGTCCAAGATCGGCCGTTTGCGAAGATCTAATATGCCTAAACTCGGGGGTCGCGCTGGCTTTGCCGAGAAGAGCGCCACCTGTGGCCGGATGGTCTGCGATGTGGAAATCTCAGCCAAGGAACTGATTCGCTGCAAGAGCTACCACCTATCCGAGCTCGTCGCACAGGTCCTCAAATCTGAGCGGGTGCTGATCCCACAAGAGAACCTCAGGAACCTCTACAGTGACTCGGCGCACTTGCTTTACCTGCTGGAAAACAACTGGATGGATTCCAAGTTCATCCTGCAGATCATGTGCGAGCTGAACGTCCTCCCCTTGGCGTTACAGATCACCAACATCGCCGGCAACGTCATGtccCGGACGCTGATGGGCGGCCGTTCGGAGAGGAACGAGTTTCTCCTGCTCCACGCCTTCTACGAGAAGGACTACATCGTGCCcgacaaacacattttcaagaagCCCCAGCCACAGGATCCGGGTGATGAAGAGGAGGAGCGGGACAACGGGAAGTCCAGGAAGGTGAGAAAGAAGGCGGCCTATGCTGGAGGTCTGGTCCTGGACCCCAAAGTCGGTTTCTATGACAAGTTCATCCTGCTGCTGGACTTCAACAGCCTGTACCCCTCCATCATCCAGGAGTTCAACATCTGTTTCACCACAGTGCAGAGGGTGGCACAGGGCTCTAAGAAAAAGGCAGAGGAGGAAGAGCAGGATGAGATCCCGGAGCTGCCCGACCCCGACCTTGACATGGGCATCCTGCCTCGGGAGATCCGGAAGCTGGTGGAGAGGCGGCGGCAGGCCCAGCTTGTCCCTGAACCATCCGTCTCTCTTCCTCTGCAGTATGACATCAGGCAGAAGGCTCTGAAGCTGACGGCCAACAGCATGTACGGCTGCCTGGGCTTCTCCTTCAGCAGGTTCTACGCCAAACCGCTGGCTGCCCTGGTCACCCACAAAGGCAGAGAGGTAAGCCTGCGTCCAGCTCCAGGGCTCGTCTTTCAGTAG

Function

GO: NA

KEGG:

id description
K02320 POLA1; DNA polymerase alpha subunit A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16797 lncRNA upstream 6042 19875100 ~ 19879716 (+) False AMCG00016429
TU16709 lncRNA upstream 320646 19564800 ~ 19565112 (+) True G13500
TU16705 lncRNA upstream 373592 19511913 ~ 19512166 (+) True G13496
TU16704 lncRNA upstream 415302 19470175 ~ 19470456 (+) True G13495
TU16703 lncRNA upstream 415660 19469635 ~ 19470098 (+) True G13494
TU16825 lncRNA downstream 116676 20014944 ~ 20018086 (+) True G13593
TU16833 lncRNA downstream 133225 20031493 ~ 20032916 (+) True G13599
TU16913 lncRNA downstream 321175 20219443 ~ 20256020 (+) True G13659
TU16917 lncRNA downstream 388807 20287075 ~ 20289834 (+) True G13662
TU16940 lncRNA downstream 420749 20319017 ~ 20319339 (+) True G13681
AMCG00016429 mRNA upstream 6033 19875056 ~ 19879725 (+) True AMCG00016429
AMCG00016431 mRNA upstream 16740 19866278 ~ 19869018 (+) True AMCG00016431
AMCG00016430 mRNA upstream 71148 19811402 ~ 19814610 (+) True AMCG00016430
AMCG00016432 mRNA upstream 85944 19758327 ~ 19799814 (+) True AMCG00016432
AMCG00016422 mRNA upstream 440873 19438593 ~ 19444885 (+) True AMCG00016422
AMCG00016439 mRNA downstream 13572 19911840 ~ 19938673 (+) True AMCG00016439
AMCG00016441 mRNA downstream 100164 19998432 ~ 20005939 (+) True AMCG00016441
AMCG00016451 mRNA downstream 109729 20007997 ~ 20009859 (+) True AMCG00016451
AMCG00016450 mRNA downstream 112028 20010296 ~ 20014909 (+) True AMCG00016450
AMCG00016449 mRNA downstream 161075 20059343 ~ 20064622 (+) True AMCG00016449
TU16114 other upstream 2763826 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 3399755 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 3399755 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 3400610 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 5447152 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 4181749 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 4636750 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 5109694 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 5234930 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 5252215 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile