RNA id: AMCG00016440


Basic Information

Item Value
RNA id AMCG00016440
length 2606
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00016440
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19969592 ~ 19979924 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAatggcaaagaaaaataaagatccTTTTGGTTTTGTCTGGGAGCCAATCAGAGAGGGAAGAGCCCGTCAATGTAAGAGAATCGGGAGCAAAGCGAGCGCAGCGCAGCGCACAGGACATTAGTGTCTCCAAGAGTGGCTGGAGAAGAGGGGGACCCGACAGACACCGGCGGAGAGACGCAGAAAACAAGGGGGGGCAAGAAAAcagggtggaaaaaaaacaatctccaaaaggaaaaaatgaGCAGTCAGTACGAGGAAGACATTTCCGAGAGAACAGAGTGTAAAAGTAGATCTCCAACTTTGCTCTCCTCGTACTGTATAGACAGCATACTGGGCAGGAGGAGCCCCTGTAAAATGAGACTGATAGGAGCGCAAAGTCTACCCGGCAGAGCGGACCTGGACAAGGCCGGCCAAGgttCCCCTAAAGACAGTCTCTCTTTCGATTCGGAGATCCACCTGCCCCCGAAGTTGCGCCGGCTTTATGGGCAGGGAGGGAAATACCTGGAGTCCAGCAGAGGATTTAACGAGCATGGGGAGAAaggggagagggacagagtaCTGGAGCAAACCTGTGAAAACCTGAAAATCATCCAGGCCCCGCAGGTCAGTATCAGCCGCAGTAAGTCCTACAGGGAAAACGCGACCTACAGCCAAAACGCAGGGGACCAGAGCCCGGAGCGCAGCGCGGAGGAGCGCACGGAGCTGGAGACGCGCCACTGCGAGGAAGACGCCGTGAAGGAGGAGAACTGCGGGGAAGGAGACCTGTCCCCCAAGGGTGAAGAAGGCCTTCACCACGATGGGGATGTTAAAGACGGGGACGACAGCGTGTGCTTGTCCGCTGGCAGTGACTCGGAAGAGGGGATGCTCAAGAGGAAGCAGAGGAGATACAGGACTACCTTCACCAGTTACCAGCTGGAAGAACTGGAGAGGGCTTTCCAAAAGACGCACTATCCCGACGTGTTCACCAGagAAGAGCTGGCGATGCGACTAGACTTGACAGAAGCCCGAGTTCAAGTGTGGTTTCAGAACCGCAGGGCTAAATGGAGGAAGCGGGAGAAGGCTGGAGTTCAGACTCACCCGCCAGGACTGCCTTTCCCCGGCCCCCTGGCTGCGGCCCACCCCCTGAGCCACTACCTCGACGGCAGCCCCTTCCCCCCGCACCACCCGGCGCTGGAGTCCGCCTGGACagctgccgccgccgccgccgccgccgccttCCCGGGCCTGCCGCCCCCGCCCGCCAGCTCCAACCTGCCTCCCGCCGGGACCCCCCTGGGCCTCAGCACCTTCCTGGGGGCAGCCATGTTCCGACACCCGGCCTTCATCAGCCCCACCTTCGGCAGGCTTTTCTCCACGATGGCACCCCTGACCAGCGCTTCCACTGCAGCCGCTCTTCTGAGACAGCCGGCCCCGGCAGTGGAGAGCGCGGTGCAGGCCAGCGGTCTGTCCGACCCCACCGTGGCTGCGGCCGACCGCCGGGCCTCCAGCATCGCAGCCCTCAGACTCAAAGCGAAAGAGCACTCTGCCCAGCTCACCCAGCTCAACATCCTGCCGTCCAGCAACACGGGCAAGGAGGTTTGCTGAGCCCAAGGGCCTACACTCACCAGGAGCACGACCAAATTCAAAGAGGACTGGCAACTCTCGCAAGCGGCTAGGATTCTGAAGGCCCCATCTCCCCTACACTCCCTATCCACCCCCCCACAGTCCACAACCACACCTTGTGCCATGCATCAGAAAAGTCATGAACTGGCTCGAACCAGCATTGGTCACCGAATAGAACAGTCAGGATAGATGATAAagagttgttttcttttccttccatAGTAAACTAGAACTCTTATAACCCAAGGTGATGCACACTTACTTACATGTAAGTATGAAATgtaagcaaaagcaaaaacatacaaacttaCTGGAAATGCAAAAGGTCCTTAGACAATGGATCATTTTCTTCACCTGTAATGGAAGAGCCAACACATGGAATATCATTTCACCTGCTTCCGATGTACTTTGAGAGATTGAGCACACGGTCATTTTTATTATCTACGCCACTGTGTGACCAGAAGTACAGCCGTAACGGCACATTGACGCGAAACATTCGTAAGACTGGACTACAAAGTTGGGAATGACTCGAGCTAATGGCATATTACCAGAAGTTGAAAGTGGTGCACTTACATTATAGGATTGTTCTGTCCTTCATCTGTTTTACATTGTAACCAAGGTTGCTATGCCAAAGGGAAATATACTACTGCCAGATTTTTGGACTGTTTTAGTCACTAAACTGTGATTAGTACTTCTGTACATAAAGttgtaattaagaaaaaaaagcaaaacaaagctttgtatatttgaaatgttataaaaaGAAGTTGCACTTGATATAGTATTGTATGGATGTTACCCTGTAGATTTTTTCCTGTGTCTGTGAAACAATAGGTTCCtagaatattatttatgtaaactCTTTATTTAACTTATAAGCCACAGGTTTTGAAAACCTTGAAAAGGCAATGatactttttttgtaatgtaaatgtttgtacTTTTCCTTGCCTCAGTTGAGGCAGAAAAGTGGcctactaaaaataaaaatgttgaacaAGC

Function

GO:

id name namespace
GO:0021539 subthalamus development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048666 neuron development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09452 ARX; homeobox protein aristaless-related

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16616 lncRNA downstream 711035 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 712673 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 716178 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 880960 19088224 ~ 19088632 (-) True G13366
TU16528 lncRNA downstream 891769 19077368 ~ 19077823 (-) True G13341
TU16865 lncRNA upstream 23225 20003149 ~ 20004940 (-) True G13615
TU16939 lncRNA upstream 335818 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 488322 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 506957 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 615405 20595329 ~ 20598765 (-) True G13789
AMCG00016437 mRNA downstream 87767 19880271 ~ 19881825 (-) True AMCG00016437
AMCG00016433 mRNA downstream 94698 19872617 ~ 19874894 (-) True AMCG00016433
AMCG00016434 mRNA downstream 98290 19869693 ~ 19871302 (-) True AMCG00016434
AMCG00016436 mRNA downstream 103897 19861454 ~ 19865695 (-) True AMCG00016436
AMCG00016435 mRNA downstream 112088 19817121 ~ 19857504 (-) True AMCG00016435
AMCG00016444 mRNA upstream 25999 20005923 ~ 20007711 (-) True AMCG00016444
AMCG00016445 mRNA upstream 37456 20017380 ~ 20031020 (-) True AMCG00016445
AMCG00016442 mRNA upstream 51507 20031431 ~ 20040137 (-) True AMCG00016442
AMCG00016443 mRNA upstream 63426 20043350 ~ 20060165 (-) True AMCG00016443
AMCG00016446 mRNA upstream 91824 20071748 ~ 20082592 (-) True AMCG00016446
TU16556 other downstream 864211 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3108413 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 3108413 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 3108413 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 5177623 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 155273 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 3475168 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3719225 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4331113 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4331113 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile