RNA id: AMCG00016441


Basic Information

Item Value
RNA id AMCG00016441
length 1826
RNA type mRNA
GC content 0.47
exon number 15
gene id AMCG00016441
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 19998432 ~ 20005939 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGCACGGTATTTGTCTGGCTTTGGCAATGAATTTGCCACAGAAGATCCACGTTGCCCTGGGGCGTTACCGGATGCACAGAACAATCCGCAGGTGTGCCCCTATGGTCTGTACGCAGAGCAGCTCTCTGGCTCCGCCTTCACCTGCCCACGACCGACCAATAAGAGAAGctGGCTTTACCGGATACTACCCTCCGTGCGTCACAAGCCCTTTGCACCTCTGGAGCAGGGACACCTGACACAAAACTGGGATGAAGTCGATCCCGATCCCAACCAGctCCGGTGGTTGCCATTCACTGTTCCCAAGGTATCCGAGAAGAAGATGGATTTTGTGACAGGTCTGCACACAGTGTGTGGGGCGGGGGACACCAGAACTCGCAATGGGATTGCCGTTCACATCTACACCTGCAACATCTCTATGCTcgacagGTGTTTCAACAACTCGGATGGGGATTTTCTAATTGTTCCCCAGCAAGGAAAACTCCTGATTACAACTGAATTTGGGAAAATGATGGTAGAGCCCAATGAGATCTGTGTTATTCAGCAAGGGATGCGTTTCAGTGTGGACGTGTTTGGGGAGGCGAGAGGCTACATCCTGGAGGTGTACGGCTCTCACTTTGAGCTGCCGGATCTTGGACCTATAGGTGCCAATGGCTTGGCCAATCCTCGTGATTTTCTGGTGCCTGTTGCCTGGTATGAGGATCGCAAGGTGCCCAGTGGGTACTCGGTCATAAATAAGTACCAGGGCAGGCTATTTGCAGCTGAACAGGATTTTTCACCATTTAATGTCGTGGCCTGGCATGGAAACTACGTCCCATACAAATACAACCTGGAGAAGTTCATGGTGATCAATTGTGTTGCCTTTGACCACGCTGATCCCTCCATCTTCACGGTGCTGACAGCCAAGTCCACTCGCCCCGGTGTGGCTATTGCAGACTTTGTCATCTTTCCCCCACGGTGGGGGGTTGCTGACCACACGTTCAGGCCCCCGTACTACCACAGGAACTGCATGAGTGAGTTCATGGGCTTGATCAAAGGTTACTACGAGGCCAAGGAGGAAGGTTTCCAGCCAGGAGGGGCCAGTCTTCACAGCATAATGACCCCGCACGGCCCCGACAGCGAGTGCTTTGAGAAAGCCAGCGGGGCCGACCTGAAGCCAGAGCGCGTGGCAGAGGGCACCATGGCCTTTATGTTCGAGTCATCCTTCAGCATGGCAGTCACTAAGTGGGGTCTGGACACCTGTAATCGTCTGGATAAGAACTATTACAAGTGCTGGGAACCTCTGAAAAGCCACTTCAATCCCAACTGGAAACCGAGcagcaaataaagaaaacagcagGAGATAAAGGAAGAACGTGGAGCCATTTCTAACACTATTCTTCAGCTGATCAGCGGACCTGGTTACTGTGTTTGCTAGAAAATGAAGGTTAATTGTATCTACAAGCACCACCTAAATGCAAAAGAAGCATCCCCATTGgcctaattaaatacattggaTGAATGCCCTCCCTTTATAGCTTAATAAACTagaattataaattataaattagcAAGAAAAGTTAAATAATCTGATCTTTGCCTTTAactagtttttaattaatctcttcCTTGGTGGCCAAATTCAATGATGATTTGGTTATAAAACATtcctcatttttaaaagttgagTTTAAATGAAGTTTCCAAACataatctgaaaatattgaGATTGGCTTGCAAGTTTCTTTCTATATTAGCAGTAAAATGTCCAGCATTCCCaccaatgtttaaatacatatggACAGACTTCCTTGTGTTTCTTGCAAATAAAGCTACTCAAAACTA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0004411 homogentisate 1,2-dioxygenase activity molecular_function

KEGG:

id description
K00451 HGD, hmgA; homogentisate 1,2-dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16797 lncRNA upstream 118716 19875100 ~ 19879716 (+) False AMCG00016429
TU16709 lncRNA upstream 433320 19564800 ~ 19565112 (+) True G13500
TU16705 lncRNA upstream 486266 19511913 ~ 19512166 (+) True G13496
TU16704 lncRNA upstream 527976 19470175 ~ 19470456 (+) True G13495
TU16703 lncRNA upstream 528334 19469635 ~ 19470098 (+) True G13494
TU16825 lncRNA downstream 9005 20014944 ~ 20018086 (+) True G13593
TU16833 lncRNA downstream 25554 20031493 ~ 20032916 (+) True G13599
TU16913 lncRNA downstream 213504 20219443 ~ 20256020 (+) True G13659
TU16917 lncRNA downstream 281136 20287075 ~ 20289834 (+) True G13662
TU16940 lncRNA downstream 313078 20319017 ~ 20319339 (+) True G13681
AMCG00016439 mRNA upstream 59759 19911840 ~ 19938673 (+) True AMCG00016439
AMCG00016438 mRNA upstream 100164 19885758 ~ 19898268 (+) True AMCG00016438
AMCG00016429 mRNA upstream 118707 19875056 ~ 19879725 (+) True AMCG00016429
AMCG00016431 mRNA upstream 129414 19866278 ~ 19869018 (+) True AMCG00016431
AMCG00016430 mRNA upstream 183822 19811402 ~ 19814610 (+) True AMCG00016430
AMCG00016451 mRNA downstream 2058 20007997 ~ 20009859 (+) True AMCG00016451
AMCG00016450 mRNA downstream 4357 20010296 ~ 20014909 (+) True AMCG00016450
AMCG00016449 mRNA downstream 53404 20059343 ~ 20064622 (+) True AMCG00016449
AMCG00016448 mRNA downstream 98977 20104916 ~ 20126284 (+) True AMCG00016448
AMCG00016457 mRNA downstream 303040 20308979 ~ 20316754 (+) True AMCG00016457
TU16114 other upstream 2876500 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 3512429 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 3512429 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 3513284 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 5559826 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 4074078 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 4529079 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 5002023 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 5127259 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 5144544 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile