RNA id: AMCG00016443


Basic Information

Item Value
RNA id AMCG00016443
length 5429
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00016443
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20043350 ~ 20060165 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGACTTTTACTGAAATGAGAAATCTTGTTGGAGTTAATGAGCAAACACAGGCAAGAAGAGAGCAATGTCACTGTGATACACCCATGTTTGCGCAGCATACCTGTTAAACACAAAGTGGAAAACTGGAGCTGATAAGATTGACATACTTCTTGCTCAGGAACCTGAAAGCTACCAGGcagttcttcattttgtttaatacgAGACCGTTTGATTTTGATTGAATTCACATTTAGCTACACCAGCGACTGGGTGAAACAGGAACATGCCAGAAATCAACTTGCATTGAAATTGGGAAGGAACCGTTATTACCAGTTCATCAGGTAGAAAATAAGGAGGACCAAGtcgacctgagagagagaggataaagAATAGGTCTGCCTACACCTACCGGCCAGTGCTCAGTGGTGCCATTTCGGCTGGCTAGGCTTGGTGCGCTCAGGTGCGCCTGCAGCGATGGAGGCGTTATTGGACGCTTACGCACTGTGCCGATCGAGGGATAGGCTTCAGCCTTAATTCCAAACCGCATTTTTGGAGTGTTTTTGGCAACCTGTCTATGGGAAAATGCACCGGAGCATTAAGGGTTAAGAGCAAACcagcgtaaaaaaaaaaaaaagaaaaacaagaacacccAGGTATAATGACAACAGCCGCCAAAAACTTGGATCTGGGTTTCTTAAACGAGGAAGAAGCAGACTCGATCTTGGGAGTGCTGAAGCGAGACGAGCGGCTGAAAACCTGCGACAAGGAGAGGATCGGGCGACTTCAGCATGCAAGAAAAGACCTGACGTGGCTGAAGGGAGTAACTGGACAGTGGTTTGAGGATATACAGAGGAACAAGTACAAAAATGAGTCCAGTGTGAATGCTGTCCTACAGCAGTCTCTCACTGTCAAAGTTAAGAAGAAAGTCCGACCGGAGCTTAaatttggaaaaacaacaagttTAGGAACACACAACGATGAAGCGAGTGTTGGTGCTAATCCCAATGGCAGCTCCTTCCGAAATCGACTGACTTCATTATTCAACTTAAAAAGCTCACGGAAGCGTATCGCCCAAGAAAACCAGAAAGAACATAGGAGCAGACAAACGGTGAAGGCACACATGATgaggaaagcaaacaaaccagtAAAAGAGAAACTCACCACTGgtctgtcagcaagaacagagATTCTGCTGATGTTCAAGAGGACATATTTGCTGGAAGAGGAGAGTGCACCTGTAGAGGCACAGGAAGAAGAGAGTGCACCTATAGAACCTGAGGAAGAGGAGTGCGCACCTGTAGAGCCACAGGAAGAGGAGTGCGCACCTGTAGAGGCACAGGAAGAGGAGAGCGCACCTGTAGAGGCACAGGAAGAGGAGAGCGCACCTGTAGAGGCACAGGAAGAGGAGAGCGCACCTGTAGAGCCTGAGGCAGAGGAGAGCGCACCTGAAGAGCCTAAGGAAGAGGAGAGCACACCTGTAGAGCCTGAGGAAGAGGAAAGCTCTCCTGTAGAGGCACAGAAAGAGGAGAGCGCACCTGTAGAGGCACAGAAAGAGGAGAGCGCACCTGTAGAGCCTGAGGAAGAGGAGAGCGCACCTGTAGAGCCTGAGGAAGAGGAGAGCACACCTGTagaggcagaggaagaggagagcgCACCTGTAGAGGCTCAGGAAGAGGAGAGTGCCACTGTAGAGGCAGAGGAGAGCACTCCTGTagaggcagaggaagaggagagcgAACCTGTAAAGCCTGAGGAAGAGGAGAGCACTCCTGTGTCAAGCAGCGAACCGTGGCCTCCCGTGATTGGTGCTTCAGAGTTAAAGAGGAGTCGATCACTAAACGATCTGCATTCACAACCGCAAAGCAATGAGCAAGACAATAGCCCTGAGGATGGCTTTAACTCTGTAATTGCCAAGATGTCCTCAGTGGCTTCAGATGTATGCAGATACTACACAGGGGGCATGAGGGGACTGCTGGAAGTTAAAGAAAAGAGAGATCTTTTTGGTTTCAATCGTGCATACAGTGAGGATTTCTCTGGACCACATGTTCACAGGAATGCCATTTCTCAACCTCGTTTCATTCTTAAGAAGCAATCGCACGCAGATGGAGAGTCTTTTTATGGATACAATAGCATGGACAGGAAAAGATCTCTTGGTCATCAAAACGTTTCTCAACCATTTGGGAATGGAAATAGTAAAGGAGTGAGCTGGCTTGTGGACAGTGAACGGACAACAGTAAAGAGCCCCATTTCTGATGTTGCCTCTGCAAAATTGAACAGCAGGTCACCGGTCACATCACCAGTTGTCTCCCATCAAAAACAATATCCTGCACAAGAGAGATTCCAGTACCAAAGGATTTCACAGGATAATCCACAGAGCGCCTTGGGATTAGTTTCCCCTATGAGTCCAAAGTCATTAACAAGCCCTTTATTTCCAATGAGGAGATATAACTCTGTAACCATTTTCTCTAGCAGCATCCCTTCTGGTCACAATGAGAAGAGTTCTCCCACGTATGGCACACCCTACACAAGCACTCCAAAAATTAACTTGGCTGAGCCACGCAGAGTTAAAAAAGGTCCCTACCATACAACGTCCCCTAGCACTGAAGGGAAAACTCCAACCTCCCCATTGAGAAACAGCAAGGGAGACCTTTTTCATAACTATGGGGAAACTTCAAGAGAAGAGATTTCAAGGACCAAGACCCTGTCCATTAACCCCAGCTTCAGCCCCCCACCACAAAACCAGGCCAAGACTGACAACATGTACACAGCACAGCAAGGTCCAGGAAGTAACAGCCCTGACAGCCACCCCCATCAGCTCTGCCTTGCTAGGAAGAAGCATTACATGTCGGAAAGATCTCCTACAAGCTATATGCGCCATTCATCTGATAAAGAGAGTTCTCCAAATGATGTTAAGACCTACACAGTCTCAACTCAAAGCCCTATGGAAGCTTATTCTCCTGCTGTTCAGAGAAACCGGTCCCAATGGTCCCCAAGTCCTGGTCTGTCTAGTACTCCTGCATCACCATCCAGATTCCCCCACAGTGGGGACAGTCCAAGGACTTATTTGTCCCCGCAACACGTCAGCCCAGCCCAACCAACATCGCCAGCGAGATCATTTTTGGATCAGGAGTCGAAGGGTGATGGCCACTCCATGCCTTCTACACCCAGTTCTGATGACAGGAGGTTTGCATACAGGCGCAACATCATTAACAGCCATCCCAGCTCACACTTTGTCTTTGATTTCCAAAATGACATCAGCTCACCAAAAGACAAGATTCAGAGCCACTCCCTAGATGTTCCTGACCACTCCCCTCAGTCCCTGTCTCCAGGATCACCCAGCAGATACAGGAGAAGACTGAGCCAAGCATCCACCAACAGCTCTGCCAGACCATCCCACAGCAGTGACTCTGAGCAGCTGTCACCCCTCCACAATCATCACAGAAGAGCCAAGTCATATAACTTGTACCAGGAGATGGAAGACAACAGCCCAACTTGCATCCTCCATAGTCCTCTCACTGATGCCAGACTAAGGTCTACGTCTGAAAGGATTCATAGTATAGCAATGCAACATAACCTGTCCCCCAAGCactctgcaaaacaaagtgaaagTGACAAAGTAATGAAATGGGAAACAACTGGGACAAATTGCACCGTTTTCCCAGAACAACCTGCACTTTTGAAACCGAATCTGCAGGGCCACATTACGGATACAAATACTGTAACTGATCAAAGGATGTATGAGGAAAGGTACTCCCCCAGTTACAAAAGAGACACCTCACAAAACATGTCACCTGAAAACTTTCAAGTTCCTCAAAGGCAATCAGTTTGTAATACATTTCCTGGAAACAGTTACAACAATACATATGTGGACAATAGCGATGTTTTGCCAACTGCAACcagggaaataaatacagttgGCAGTACAAAGCTACAGAATACTGTAGATCATACCCCACTAACCagacaatacattttcagagacAAAGGAAAGATTGTAAGTAAGGTCAGCCCAGCTGTGCCAAATGATTGTATAAAGATGTCTGAAAGTTCTACCCTGGATCTCCCACAGAAGAAACAAGTCATGAACAGAAATCGGTTACCAATTAGGAGGATTCAAGAAAAAGGCAGCCCACCCAGCTCCAGTGTGGACAAGCAGCAAGTGTCTTGCCACCTTTCTTCTTCTGACAGAACCGGCAATGATACTGTCTTAAAGAAAGGCAGTAAAGTTGAACAAGTGCTGCACCGTACAAAGTTGACTTTCAGTGCCAAGTGGGTTGAAGACGAGATACTTACAACAAGGAAAAAGAGCAAGAAGATGGATGAGGGCTCCCAAACCAGCTCCACACAAAGTTCTGAAACCCACGAGAATGTGGAGACCATTGAGGAAGTGATCAGGGTGGTATTAAAGCCCTCcaacaatgaaaacaagctGGCAAATAACAATTACAGACTGCAGTATTCTGACATCCAATGGTTATGTCCACCAAGAAAGAACAGTGAACCTGAGGACATGCAGTTCAAAACTTATGAAAATGTCAGTGGttcagaaaaactgaaaaatgttaatAGGAGCCAGTCCTCCCCAGCTGAGGACTACAAACCAATTCAAAATCAGGCTTACAGTTATGGTACAATACCTGGATGCAAAAAGTCCTCTTCTGGAGCAAGATTCAGCAAATACAGGTTGAACTATGATCCAGAagatttggaaaataataacgAAGTCTTTTACAGTAATAGGAAATCATCAGGGCAGCCCAGCAGGAAGAAGACTGTCTCGTTTTCTGAGGATACAGAGAGGGCCGCTGGTGAAACCCTCACCAACGCAAAAAGCATGAATGCCGTTGCTGAATGTTACTCGTCTGCCGATTACGGACTGAAACATGGCCGGTCCTATTCTGTAAACAGTTTCCAGAGCAGCCGGCCTTCTGGGTTTGACCGGATATCCACAGGCCCTAAAATCACAAGCGCTGACAAGCACAGCACTCTGACCAGGACACGCTCTGAGGTGCTTACCTGCGAACCAGACCAAAGTCCAGCAGAGAGTGACAAGGCAGGCAAAGGTAAAACTCTTCTTAAGACCAGCAATGGGTACAAAGTGAAGCCTCCCGACACTTCCATATACAACGCAGAGCAGCAGGCTTTGTATTTGGACCAGATTAAGAAATCCCTGACCGTGGGTAGGCTATGGAAGCCAGGCTGCCTTGAGAACCTTCATTCCCACAAGGATGAAGAGTCTCCCTCTTCTCAGAGTCCCACATCAAGGCTGCTTAGCACTTCTTCCACCAGTAGCTTCACCTCCATGGAGAGCCTGTCTCCTCTCGGGCCTCTGGCCTCTCGGGGCTACAGAGGCAGCCAATCAACCTTCGAGGAGTCTGACTCCGACACCACCACGGACGACGAGTACTACCCGAACATTGATGGACCCGCCAAAGAATCAGAACTGTAA

Function

GO: NA

KEGG:

id description
K22236 EXPH5; exophilin-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16865 lncRNA downstream 38410 20003149 ~ 20004940 (-) True G13615
TU16616 lncRNA downstream 784793 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 786431 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 789936 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 954718 19088224 ~ 19088632 (-) True G13366
TU16939 lncRNA upstream 255577 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 408081 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 426716 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 535164 20595329 ~ 20598765 (-) True G13789
TU17099 lncRNA upstream 570307 20630472 ~ 20636938 (-) False AMCG00016479
AMCG00016442 mRNA downstream 3213 20031431 ~ 20040137 (-) True AMCG00016442
AMCG00016445 mRNA downstream 12330 20017380 ~ 20031020 (-) True AMCG00016445
AMCG00016444 mRNA downstream 35639 20005923 ~ 20007711 (-) True AMCG00016444
AMCG00016440 mRNA downstream 63426 19969592 ~ 19979924 (-) True AMCG00016440
AMCG00016437 mRNA downstream 161525 19880271 ~ 19881825 (-) True AMCG00016437
AMCG00016446 mRNA upstream 11583 20071748 ~ 20082592 (-) True AMCG00016446
AMCG00016447 mRNA upstream 22489 20082654 ~ 20083255 (-) True AMCG00016447
AMCG00016452 mRNA upstream 29404 20089569 ~ 20094925 (-) True AMCG00016452
AMCG00016453 mRNA upstream 68743 20128908 ~ 20135484 (-) True AMCG00016453
AMCG00016454 mRNA upstream 85648 20145813 ~ 20146301 (-) True AMCG00016454
TU16556 other downstream 937969 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3182171 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 3182171 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 3182171 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 5251381 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 75032 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 3394927 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3638984 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4250872 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4250872 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile