RNA id: AMCG00016447


Basic Information

Item Value
RNA id AMCG00016447
length 594
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00016447
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20082654 ~ 20083255 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tggtCGCCCATTTGTGAGCTAAAGAAGGCACAGCTATCAGGAAATCGCACCATGAATCCCTGCCCGGtgtatgacaaaaacaacaaaacactgttCCTCTTCTGCATCGGTGTTGATAAAACAGAGCGAgagcaaataaaaaatgcaaaaacgcAGCCAAACTGTGTTATCAAAGACAACAGTGAGAATTGGAGTGATATAACTAATTTGACAGAGAAGGTGATTGgccaaaaagaaaaggattggGCAACCTTCGCCGTGGGGCCGGGCCATGGGGTGCAGCTGAAGAGTGGGAGGTTGATTATCCCAGCCTATGCCTACAACATTGAGAGATGCTGCTCCACACCGTATTCCTTCTGCTTTTATAGTGATGAAGGACAGGTCTGGAAGATGGGAAAAAGTATGCCACAGTTATCTACACTAGAGTGTCAAATGGCAGAGGTTGAAATTCAGAGTGAAAAATCAGAGACAGAATCAGAGACAAAACTCAAAATTCTGAATTATTTGTACTGTAATGCCCGCAATGTAATGTCGGGTTACagggtagaagctgaaagtcaGAACGCAGGCAAAGATTTTGCAGAGAAGAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16865 lncRNA downstream 77714 20003149 ~ 20004940 (-) True G13615
TU16616 lncRNA downstream 824097 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 825735 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 829240 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 994022 19088224 ~ 19088632 (-) True G13366
TU16939 lncRNA upstream 232487 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 384991 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 403626 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 512074 20595329 ~ 20598765 (-) True G13789
TU17099 lncRNA upstream 547217 20630472 ~ 20636938 (-) False AMCG00016479
AMCG00016446 mRNA downstream 62 20071748 ~ 20082592 (-) True AMCG00016446
AMCG00016443 mRNA downstream 22489 20043350 ~ 20060165 (-) True AMCG00016443
AMCG00016442 mRNA downstream 42517 20031431 ~ 20040137 (-) True AMCG00016442
AMCG00016445 mRNA downstream 51634 20017380 ~ 20031020 (-) True AMCG00016445
AMCG00016444 mRNA downstream 74943 20005923 ~ 20007711 (-) True AMCG00016444
AMCG00016452 mRNA upstream 6314 20089569 ~ 20094925 (-) True AMCG00016452
AMCG00016453 mRNA upstream 45653 20128908 ~ 20135484 (-) True AMCG00016453
AMCG00016454 mRNA upstream 62558 20145813 ~ 20146301 (-) True AMCG00016454
AMCG00016455 mRNA upstream 172381 20255636 ~ 20282317 (-) True AMCG00016455
AMCG00016463 mRNA upstream 202067 20285322 ~ 20289785 (-) True AMCG00016463
TU16556 other downstream 977273 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3221475 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 3221475 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 3221475 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 5290685 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 51942 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 3371837 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3615894 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4227782 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4227782 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile