RNA id: AMCG00016448


Basic Information

Item Value
RNA id AMCG00016448
length 2040
RNA type mRNA
GC content 0.55
exon number 17
gene id AMCG00016448
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20104916 ~ 20126284 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCTTTTTCAGTTAACAACACTGCAGTTACGAACTCCATCATCATGAATACCAACGGCCCCCCTGACCTGATGCTGGATGCaagatcagtgtgtgtgtctgtggatgAGGTGGTATCGAATGGTGTGGGGCAGCAGCAGACCCCCCTGCTTCATGGGCACCTGAAGAAGGTGGAGAACAGCCTAACCGAGGCCCAGCGCTTCTCCTATCTGCCCCGTTACAAGACCTTGTTGAAAGGCATCTCTGGGAACTTCAGCAGCGGAGGTCTGGTTGCCATTATGGGCCCTTCAGGAGCCGGAAAGTCTACCCTCATGAATATCCTGGCTGGCTACAGGGAAACTGGGATGAAAGGCGAGATCCTCATCAACGGCCATCCCCGTGACCTCCGATCCTTCCGCAAGGTGTCGTGTTACATCATGCAGGACGACATGCTCCTCCCACACCTGACTGTACAGGAGGCCATGATGGTGTCAGCTAACCTTAAACTTCAAGAGAAAGACGAGGGCCGGAGAGAGATGGTGAAGGAGATTCTGACTGCCCTTGGACTGCTTGAATGTGCCAAAACACGGACGGCCAACCTGTCTGGGGGCCAGAGGAAGCGGTTGGCCATTGCTCTGGAGCTGGTCAACAACCCCCCAGTGATGTTCTTTGATGAGCCCACCAGGTCAGTCGTATCCCTCATGAAGGCCCTGGCCCAGGGGGGGCGCACAATCATCTGCACCATCCACCAGCCCAGTGCCAAACTCTTCGAGCTGTTTGACAAGCTGTATGTCCTGAGTCAAGGACAGTGTATCTACCGAGGCAAGGTCTCCAGTCTGGTCCCTTATCTTCGGGAGCTGGGACTCAACTGCCCCACGTACCACAACCCTGCAGACTTCGTGATGGAGGTGGCCTCGGGGGAGTACGGAGACCAGACCTCTCGGCTGGTGAGGGCCGTGCAGGACAGGAAGTGTGAGAAGGACTACAAGACCGAGACGAATGGGGACAGGCCTCACAACCCCTTCCTGTGGCACAGACCCTCAGAGGAGGAttcctcctccacagagggctGCCACAGTTTTTCTGCCAGCTGCCTGACTCAGTTCTGCATCCTGTTTAAGCGGACCTTCCTCAGCATCATGAGAGACTCGGTCCTCACTCACCTGCGCATCACGTCTCACATCGGCATTGGCATCCTGATCGGCCTGCTGTACCTGGGCATCGGCAACGAGGCCAAGAAAGTGCTGAGCAACTCCGGGTTCCTCTTCTTCTCCATGCTCTTCCTCATGTTCGCCGCCCTCATGCCCACCGTATTGACCTtTCCTTTGGAGATGGGGGTGTTTCTCAGAGAACACCTAAACTACTGGTACAGTCTGAAGGCCTATTATCTTGCTAAAACCATGGCTGATGTGCCCTTTCAGATAATATTCCCCGTGTCGTACTGCAGTATAGTGTACTGGATGACATCGCAGCCCTGCGACGCCCTCCGCTTTACTCTCTTCTCTGCGCTAGGGACGATGACGTCACTGGTGGCGCAGTCGCTGGGGCTACTGATAGGAGCCGCCTCCACCTCTTTACAGGTGGCGACATTCGTGGGTCCAGTGACTGCCATCCCAGTGCTGCTGTTCTCGGGATTCTTTGTCAGCTTCGATACCATTCCTAAATACCTTCAGTGGATGTCATACATTTCTTATGTCAGGTACGGCTTCGAAGGGGTCATCTTGTCCATTTACGGGCTGGACCGCGAGGACCTGTACTGCGACAAGGACGAAACCTGCCACTTCCAGAAGTCCAAGGCCATCCTCAAGGAGCTGGACGTGGAGAACGCCAAGCTCTACCTGGACTTCATCGTGCTGGGGATCTTCTTTGTCACGCTGCGCCTCATTGCCTACTTCGTGCTGCGCTACAAGATCAGTGCTGAGAGAGCGGGCATGCTGCCATTCGGCTTTGCCACTCTGAGAGCCGTAGTGTGGTGCTTTGAGCTTCTTTGCATTATGCTCAGCCCAAAGGAGGTCCTCGCAGGCAGCCCGTGCACAGTCGTTTTCATCCGAGCCTga

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05679 ABCG1; ATP-binding cassette, subfamily G (WHITE), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16833 lncRNA upstream 72000 20031493 ~ 20032916 (+) True G13599
TU16825 lncRNA upstream 86830 20014944 ~ 20018086 (+) True G13593
TU16797 lncRNA upstream 225200 19875100 ~ 19879716 (+) False AMCG00016429
TU16709 lncRNA upstream 539804 19564800 ~ 19565112 (+) True G13500
TU16705 lncRNA upstream 592750 19511913 ~ 19512166 (+) True G13496
TU16913 lncRNA downstream 93159 20219443 ~ 20256020 (+) True G13659
TU16917 lncRNA downstream 160791 20287075 ~ 20289834 (+) True G13662
TU16940 lncRNA downstream 192733 20319017 ~ 20319339 (+) True G13681
TU16941 lncRNA downstream 215790 20342074 ~ 20344085 (+) True G13682
TU16943 lncRNA downstream 217140 20343424 ~ 20345072 (+) False G13682
AMCG00016449 mRNA upstream 40294 20059343 ~ 20064622 (+) True AMCG00016449
AMCG00016450 mRNA upstream 90007 20010296 ~ 20014909 (+) True AMCG00016450
AMCG00016451 mRNA upstream 95057 20007997 ~ 20009859 (+) True AMCG00016451
AMCG00016441 mRNA upstream 98977 19998432 ~ 20005939 (+) True AMCG00016441
AMCG00016439 mRNA upstream 166243 19911840 ~ 19938673 (+) True AMCG00016439
AMCG00016457 mRNA downstream 182695 20308979 ~ 20316754 (+) True AMCG00016457
AMCG00016458 mRNA downstream 202421 20328705 ~ 20331775 (+) True AMCG00016458
AMCG00016456 mRNA downstream 224364 20350648 ~ 20353506 (+) True AMCG00016456
AMCG00016469 mRNA downstream 254329 20380613 ~ 20392489 (+) True AMCG00016469
AMCG00016467 mRNA downstream 282019 20408303 ~ 20419818 (+) True AMCG00016467
TU16114 other upstream 2982984 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 3618913 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 3618913 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 3619768 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 5666310 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 3953733 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 4408734 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 4881678 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 5006914 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 5024199 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016649 True 3390 mRNA 0.46 15 NC_007126.7 5028608 ~ 5074983 (+)
grasscarp (Ctenopharyngodon idella) CI01000092_01912280_01944807.mRNA True 2585 mRNA 0.44 17 CI01000092 1912280 ~ 1945217 (+)