Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00016449 |
| length | 1176 |
| RNA type | mRNA |
| GC content | 0.56 |
| exon number | 4 |
| gene id | AMCG00016449 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 20059343 ~ 20064622 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0001573 | ganglioside metabolic process | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0004308 | exo-alpha-sialidase activity | molecular_function |
| id | description |
|---|---|
| K12357 | NEU2_3_4; sialidase-2/3/4 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU16833 | lncRNA | upstream | 26427 | 20031493 ~ 20032916 (+) | True | G13599 |
| TU16825 | lncRNA | upstream | 41257 | 20014944 ~ 20018086 (+) | True | G13593 |
| TU16797 | lncRNA | upstream | 179627 | 19875100 ~ 19879716 (+) | False | AMCG00016429 |
| TU16709 | lncRNA | upstream | 494231 | 19564800 ~ 19565112 (+) | True | G13500 |
| TU16705 | lncRNA | upstream | 547177 | 19511913 ~ 19512166 (+) | True | G13496 |
| TU16913 | lncRNA | downstream | 154821 | 20219443 ~ 20256020 (+) | True | G13659 |
| TU16917 | lncRNA | downstream | 222453 | 20287075 ~ 20289834 (+) | True | G13662 |
| TU16940 | lncRNA | downstream | 254395 | 20319017 ~ 20319339 (+) | True | G13681 |
| TU16941 | lncRNA | downstream | 277452 | 20342074 ~ 20344085 (+) | True | G13682 |
| TU16943 | lncRNA | downstream | 278802 | 20343424 ~ 20345072 (+) | False | G13682 |
| AMCG00016450 | mRNA | upstream | 44434 | 20010296 ~ 20014909 (+) | True | AMCG00016450 |
| AMCG00016451 | mRNA | upstream | 49484 | 20007997 ~ 20009859 (+) | True | AMCG00016451 |
| AMCG00016441 | mRNA | upstream | 53404 | 19998432 ~ 20005939 (+) | True | AMCG00016441 |
| AMCG00016439 | mRNA | upstream | 120670 | 19911840 ~ 19938673 (+) | True | AMCG00016439 |
| AMCG00016438 | mRNA | upstream | 161075 | 19885758 ~ 19898268 (+) | True | AMCG00016438 |
| AMCG00016448 | mRNA | downstream | 40294 | 20104916 ~ 20126284 (+) | True | AMCG00016448 |
| AMCG00016457 | mRNA | downstream | 244357 | 20308979 ~ 20316754 (+) | True | AMCG00016457 |
| AMCG00016458 | mRNA | downstream | 264083 | 20328705 ~ 20331775 (+) | True | AMCG00016458 |
| AMCG00016456 | mRNA | downstream | 286026 | 20350648 ~ 20353506 (+) | True | AMCG00016456 |
| AMCG00016469 | mRNA | downstream | 315991 | 20380613 ~ 20392489 (+) | True | AMCG00016469 |
| TU16114 | other | upstream | 2937411 | 17116793 ~ 17121932 (+) | True | G13012 |
| TU15937 | other | upstream | 3573340 | 16484355 ~ 16486003 (+) | True | AMCG00016329 |
| TU15942 | other | upstream | 3573340 | 16484355 ~ 16486003 (+) | False | AMCG00016329 |
| TU15938 | other | upstream | 3574195 | 16484355 ~ 16485148 (+) | False | AMCG00016329 |
| TU15538 | other | upstream | 5620737 | 14437771 ~ 14438606 (+) | True | G12587 |
| TU17415 | other | downstream | 4015395 | 24080017 ~ 24110182 (+) | False | G14057 |
| TU17581 | other | downstream | 4470396 | 24535018 ~ 24561807 (+) | False | AMCG00016537 |
| TU17758 | other | downstream | 4943340 | 25007962 ~ 25010687 (+) | True | G14326 |
| TU17806 | other | downstream | 5068576 | 25133198 ~ 25133879 (+) | True | G14361 |
| TU17809 | other | downstream | 5085861 | 25150483 ~ 25157461 (+) | False | AMCG00016566 |
