RNA id: AMCG00016452


Basic Information

Item Value
RNA id AMCG00016452
length 1669
RNA type mRNA
GC content 0.49
exon number 8
gene id AMCG00016452
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20089569 ~ 20094925 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGGGGATTCCGCCCTGCCTGAATGTAGGCGCTGCTTTCTCAGTAACCCGGAAGTACTACAGAACTGCGACACCTGCCTTTATTTTGAGTCAAGATGGAGGGATCCTCGTATGAAGATGAAGTTGACGACTGGTTTATCGAATCCATTAACTTGTACACGGATCTGCATCTGTTTGAGCTCCAGGGTCCGACGCAAGTCATAGAATGGACCGGAGAGAAaaGTATCTGTGTAGCAGGCTATGGAAGTAGCAAAAGGAATGAAATCCTGGAGCTGGCTTTGCCTCAGAAACTGTACGCCAAAGAAAACCGGGGTTTGTGTCCTGAAAGGGATTTTAAGGTGGAACACGGGGGCTTCTCTGACACACCCATTCACTGCCTCAAGCACGTCTTGGGAACAAGATCTGTGGTGACCAGCGGTCCCCCCGAGAGCCCTCTGCAGATCTGGAGGATCGGAGATGTCATCAAGAGAACAGCATGTATTGAAGCTTCGACTGGGTCACGGAGCCAGAGGAAGGTTGCTCCCAGTCTCTCCGGGAAACCTTGTGTTCTCCACGCCTCCCAGGTCAATGACACAGCGCTCACTGACCTGGAGTCACACAGGTCTCTCTATTCAGTGGACACAGACTGTGCAGACAGAGTGAGCGGCCTAGAGTTTGTGAGTGCAGATGAGTTTGTGGTTTGCTCGGACAGGGGTCACTTGTGGTTGTGTGATGTGAGGGACCCAGCCGGCCTGCAGTCCGTGGCGAGCCCAGAGCAGGAGGGACTCCAGTGGTGTATGGGGTTGAAGAAACGGCACGTCCACACAGACCCAGCCGCCTGTGCTGTGGCGAGGCTCTCTTCTGCTTGCCAAGTCCTTGTCACAGATCTCAGAAGTCCAAGGAGCCCTTTGTGTCAGGCCAAGATGACCATCCACCAGGACGCTCCTTGTCTGGATTTCATGACTGTGACCTGGGCGCCAGCTTTAGATCAGTGTGTGGCTGTGTCAGGTTTCAATGGAGCAGTGCACATCTATGACACACAATCCTGGGGCCCAGCAGCCACGGAAGCAGAACCGCTGTTTATTCACAAGGGCCACAGGATGTCACACGACCCCGACAGGGACAGGGATTCAGTTGTGGTCACAACACATGTGTGGCATCCATGGAAACCCAGGACTGTGTTATCCGCTGCCACTAACGGCTCATTGCACGTCTGGGACTGGGCCGACCAGACAGCTGTCCACCGCTAAGAAGCACAGACATTTTAATACATGTCTTTTAGCTAACTCACAATCTGTATTTCCTGAGTCCTATGATTGAGGGAAATCTTCAGTCCTAACCcaggttttaatgtttaattcccCTTTTATTGGTTTCACTGTCAAGAACTGGTTACCAGAAGCTGACCCTGCAACATTCTGCGTGATTCAGCTTTCATAATAAACTGAACACGACCACATTTGTAACGTCCTTTTGATACACATGGATTCAGCATTATTCATATGTTTctgaaatgataaataaaaaatatttattctgtttttaggtttgttttttagaatgtattatttactattCTTCCATCTGGGAAATTTTGGACATCAACTATTTCCTATCAATGTATTTCCTGAGTCCTATGATTGAGGGGAAGCTTCGGTCCTAgtctaggttttattttttgcaatgttta

Function

GO: NA

KEGG:

id description
K24754 WDR73; WD repeat-containing protein 73

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16865 lncRNA downstream 84629 20003149 ~ 20004940 (-) True G13615
TU16616 lncRNA downstream 831012 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 832650 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 836155 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 1000937 19088224 ~ 19088632 (-) True G13366
TU16939 lncRNA upstream 220817 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 373321 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 391956 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 500404 20595329 ~ 20598765 (-) True G13789
TU17099 lncRNA upstream 535547 20630472 ~ 20636938 (-) False AMCG00016479
AMCG00016447 mRNA downstream 6314 20082654 ~ 20083255 (-) True AMCG00016447
AMCG00016446 mRNA downstream 6977 20071748 ~ 20082592 (-) True AMCG00016446
AMCG00016443 mRNA downstream 29404 20043350 ~ 20060165 (-) True AMCG00016443
AMCG00016442 mRNA downstream 49432 20031431 ~ 20040137 (-) True AMCG00016442
AMCG00016445 mRNA downstream 58549 20017380 ~ 20031020 (-) True AMCG00016445
AMCG00016453 mRNA upstream 33983 20128908 ~ 20135484 (-) True AMCG00016453
AMCG00016454 mRNA upstream 50888 20145813 ~ 20146301 (-) True AMCG00016454
AMCG00016455 mRNA upstream 160711 20255636 ~ 20282317 (-) True AMCG00016455
AMCG00016463 mRNA upstream 190397 20285322 ~ 20289785 (-) True AMCG00016463
AMCG00016462 mRNA upstream 197377 20292302 ~ 20303074 (-) True AMCG00016462
TU16556 other downstream 984188 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3228390 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 3228390 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 3228390 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 5297600 14790203 ~ 14791969 (-) False AMCG00016293
TU16905 other upstream 40272 20135197 ~ 20135547 (-) False AMCG00016453
TU17287 other upstream 3360167 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3604224 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4216112 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4216112 24311037 ~ 24316802 (-) False AMCG00016531

Expression Profile