RNA id: AMCG00016453


Basic Information

Item Value
RNA id AMCG00016453
length 1863
RNA type mRNA
GC content 0.57
exon number 9
gene id AMCG00016453
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20128908 ~ 20135547 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGAGACGAGCGGAAAACTTAGTGGTGGTGCCGTGAGGTTTGGCGCCACTTATGAAAGCAACAAGATGTTCGGAGGCAACAGGGGCAGCTCTGGAGCTGCCTATGGGCTCTCGAGATccctgggtggggggggtgtaggGTCTGGATATGGtctcagaggaggaggaggaggtctGGGCATGGGCATAGGCATGGGAAGTGCGGCTGGATTGGGGTTCGGAGCTGGATATGGAGGAGGCATTGCCGCAGGGGCCGGTTTTGGTTACGGTGGGGGGATGGTGCCCACTGGCATGAtgatgggaggaggaggaggagggctgGGCTTGGGGGGGGGTGCTATGGCAAGCAGGATGGCAAGCTTCAGGGCGGGTGTCGCCCCGCTGAGGGCTCGTCTGGGTGGCCGTGTCTTCAAAATTGGGGGCTTTGGCTTCAACCCTTCCTTCATAAGCAGCACCACCACAGTGGACACGGGGATCATCCCTATGCCCAGCATCGACCCCTCCCTGCCCTCGGTGGACACTGTGCAGGTCACCCGTCTGAAAGAGAAGGAGGAGCTGCAGGTTTTGAACGACAAATTTGCCTCATTCATTGACAagGTCAGATTCTTAGAGCAGCAAAACGCTGTTCTGAGAGCCAAGATTTCGATGTACACCAACCCAGACCAGAATGGACCTGCAAGCTCATCAATCATCCTGACCTCTGCCATCGGGGCTTACAAGTCCCAGATTGACACCCTGACCGCCACCAAAGAGGCAATCCTGGCTGAGATCGAACACTTCAAAGCTGTGATGGATGATGTCCAAGCCAAGTACGATGAGGAGACATCAGTGACAAAGTCTCTGGAGTTGGAGTGGACCACACTGAAAGAGgaGGTGGATCATTTGTACATGACCATCTTTGAACTGCAAACCAACATCGTGGGACTGGAAGATCAGATTGTCCTTTCCAAGCAAATTTATGATGCTAAAGTGAAGGAGGTCAGGAACATCATATCCGGGGGTGTAAGATCTGCCTTCTCCATCTCGGTGGATAATGCGGCCCAGGCGCAAGACCTGAGCTCGGCCCTGACTGAAGTGAAGGCCCACTACGAGCACCTGGCACAGCGGAGCAAACAGGACTCTCTCCTGGCGGTGCAGGACACGATCTCCATGATGTCTGGTAGCACCCAGCCCAATGTCCAGGCCCTCACTAACACCAAGGAGGAACTGCGGCTTATAAAACTACAGATCGACTCTATCCTCAGGGAGGTCGACCGACTGAAAACAGCGAACCTCCAGCTGGAATCTCAGGTTTCAGACGCTGAATCCCACTCCAGCAGCCACACTGAGCAATACCAGGAGACCGCCATCACTCTGAAGTCGCAGCTTGATGACCTCAGAAAGCAAATTGCTCATTATGGCCAAGAGTACCAGGAACTGTTGGCCAGCAAAATGTCCCTAGATGTGGAGATCACAGCCTACAAGAAGCTCCTGGACAGTGAGGAGAGCAGGCTGAAGTCCGGGGGAGGAGTGACCGTCCACATGTCCAGGACGTCAGTGGGCAGCGGTGGAGGAGCCGGCATTGGGATGGGAGGAGGTGGTGGCATGGCCTTGGccgcaggaggaggaggaggcggcggcAGCTATGGAGGCGGCTATGGTGGCGGCTATGGAGGCAGCCTTGGaggaggtctgggaggcggCCTTGGAGGCGGCCTAGGAGGAGGCTCAGGTCTCGGTTTAGGATCGAGCTTTGGAGGAGGCCTTGGTCTGGGAGGCGGCTACAGCCTTGGTGGGGGCCTGGGCGGCAGCTCGGCGGGCTTTGGCATGGGCAGCAGCGCCGGGGGCAGCTTTGTGTCCTCCAGCCTCAACAGCAGCACA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16865 lncRNA downstream 123968 20003149 ~ 20004940 (-) True G13615
TU16616 lncRNA downstream 870351 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 871989 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 875494 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 1040276 19088224 ~ 19088632 (-) True G13366
TU16939 lncRNA upstream 180258 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 332762 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 351397 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 459845 20595329 ~ 20598765 (-) True G13789
TU17099 lncRNA upstream 494988 20630472 ~ 20636938 (-) False AMCG00016479
AMCG00016452 mRNA downstream 33983 20089569 ~ 20094925 (-) True AMCG00016452
AMCG00016447 mRNA downstream 45653 20082654 ~ 20083255 (-) True AMCG00016447
AMCG00016446 mRNA downstream 46316 20071748 ~ 20082592 (-) True AMCG00016446
AMCG00016443 mRNA downstream 68743 20043350 ~ 20060165 (-) True AMCG00016443
AMCG00016442 mRNA downstream 88771 20031431 ~ 20040137 (-) True AMCG00016442
AMCG00016454 mRNA upstream 10329 20145813 ~ 20146301 (-) True AMCG00016454
AMCG00016455 mRNA upstream 120152 20255636 ~ 20282317 (-) True AMCG00016455
AMCG00016463 mRNA upstream 149838 20285322 ~ 20289785 (-) True AMCG00016463
AMCG00016462 mRNA upstream 156818 20292302 ~ 20303074 (-) True AMCG00016462
AMCG00016459 mRNA upstream 199404 20334888 ~ 20339043 (-) True AMCG00016459
TU16556 other downstream 1023527 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3267729 16858541 ~ 16861179 (-) True G12945
TU16025 other downstream 3267729 16858541 ~ 16861179 (-) False G12945
TU16027 other downstream 3267729 16858541 ~ 16861179 (-) False G12945
TU15638 other downstream 5336939 14790203 ~ 14791969 (-) False AMCG00016293
TU17287 other upstream 3319608 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3563665 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4175553 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4175553 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 4745664 24881148 ~ 24882098 (-) True G14305

Expression Profile