RNA id: AMCG00016455


Basic Information

Item Value
RNA id AMCG00016455
length 2082
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00016455
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20255636 ~ 20282317 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGGGCGAAAGTAAGGGGAAAAAGGCGAATGTTTccaagcagaagaaaaagggAGGCAACAGCAGAGACACCCAGGACCCCGTGAAGAACTTCGAGCGATGGAAGAAGAAATACAACAAGATCAAATCCAAAGTGAAACGTGAGAAGAAACGCAACAAGAAACCCGAGTGGCAGGTCGAAAGGGAGAATATCAACAATCTCGTCAGCAAGTACCAAGAGATAAACGCGACAGATGCGGTGAAGTTTTCGGATTTCCCTCTCTCTAAGAAGACGCTCAAAGGGCTGTTGGAAACAAAGTATCGGCTGCCCACGGAAATCCAGAGGCAGACGATCGGCTTGGCACTGCAAGGCAAGGACGTGCTGGGAGCAGCCAAGACTGGCTCTGGCAAGACGCTAGCCTTTCTCATCCCTTGGACGGCTGACGACGGGCTGGGCGCTCTTATCATCTCCCCCACCAGAGAGCTGGCCTACCAGACCTTCGAGGTGCTGCGCAAAGTCGGGAAGAACCATGAGTTCTCTGCCGGGCTCATCATCGGGGGAAAGgaTCTGAAGCACGAGTCTGAGAGGATCCATCGTACCAACATTATCATCTGCACCCCAGGCCGCCTCCTGCAGCACATGGATGAGACGATGGCTTTCCATGCCTCTTCACTGCAGATCCTAGTTTTGGATGAAGCAGATCGCATTCTGGACATGGGCTTTGCTGACACGATGAATGCCATCGTGGAGAACCTCCCCAAGACCAGGCAGACCCTGCTGTTCTCTGCCACACAGACCAAGTCGGTGAAGGACCTGGCCAGACTCAGCCTGAAAGACCCAGAGTACATCTGGGTGCATGAGAAGGCCAAATTCAGTACCCCAGCGACTCTAGAGCAGAATTATGTCGTCTGTGAGCTGCACCAGAAAATCAACATGCTCATCTCCTTCCTCAAGAACCACACTAATAAGAAGATCATTGTGTTTTTTGCCTGCTGCAAAGAGGTGCAGTACCTGTTCCGCATATTCTGCCGCCTGCGCCCCGGGATCTCGGTACTGGCCCTGCACGGAAAACAGCAGCAGATGAAGAGGATGGAGGTTTACAACGACTTTATCCGCAAGAAGGCAGCTTTTGACTGTCCCGAGGACGCCAACACTTATATCCACAGAGTGGGAAGAACGGCCAGgTACAAGGAAGGTGGGGAAGCCCTGTTAGTTCTCCTGCCATCAGAGGAGCCAGGGATGCTCAAGCAGCTTGAGGAAAGAAAGGTGCCCATTAACAAAATCCAGGTGAATCCTGAAAAACTGACCAATGTGCAACAGAAGCTGGAGGCTTTCCTGGCGCAGGAGACGGAGCAGAAGGAGCGAGCAAAGAGGGTGAGTTACACACTTGAGGAGAAGCCACACAATCCCATGTGTACCTTCTTCTGGTTCTGGTCCTGTCACTCTCTGGTGGTCTTCAGTTTGAGTGACCAGTTTGTATCCTGTGGGATGAGACTGGATTTGTGTGACGCTCACTTGCAGGACCTGGCCTCCTCTGAGACCCAGTTGAGAACAGGCTTCTGCCAATCGAGAGTTTCTCATGAAAAGGGAACTTGCCTATTCACAAACAtctggtttcattttcagtgcTTTATGTCCTACCTACGCTCCATCTACCTAATGAAGAACAAAGAAGTCTTTGATGTCTTTAAGATCCAGTTAACAGAATATGCTCAATCCCTGGGTCTTGCTGTGGCCCCTCGAGTCCGCTTCCTGCTCAATGCCCAGAAGCAGAAAGAGGGCAGTGCACCAGTCCAGCCAGAGGAAGACCAATCTGGCACTGAGGAAGAGCTGGAGAACTTCAGATCTCAGCTCCGAGGGGACAAGCACCCTGAACGGAAGATGCCCCATAGTGCTGTAGCCAATCCTGaatcagaggaggaggaggaagaagaagaagaggatgAGGATGATGAGGATGCAATAGCAGCGACTTCAGAGATGAAGCTGGGGGCAGATGACGATGACGAAGATGACCTGAGAGACCTGGATTTTCTGACTGTGAAACGCAGGGACGTGTTTGGTCTGGAATCTGATCCTGAAGAGGTTGgttgtgtttga

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16865 lncRNA downstream 250696 20003149 ~ 20004940 (-) True G13615
TU16616 lncRNA downstream 997079 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 998717 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 1002222 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 1167004 19088224 ~ 19088632 (-) True G13366
TU16939 lncRNA upstream 33425 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 185929 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 204564 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 313012 20595329 ~ 20598765 (-) True G13789
TU17099 lncRNA upstream 348155 20630472 ~ 20636938 (-) False AMCG00016479
AMCG00016454 mRNA downstream 109335 20145813 ~ 20146301 (-) True AMCG00016454
AMCG00016453 mRNA downstream 120152 20128908 ~ 20135484 (-) True AMCG00016453
AMCG00016452 mRNA downstream 160711 20089569 ~ 20094925 (-) True AMCG00016452
AMCG00016447 mRNA downstream 172381 20082654 ~ 20083255 (-) True AMCG00016447
AMCG00016446 mRNA downstream 173044 20071748 ~ 20082592 (-) True AMCG00016446
AMCG00016463 mRNA upstream 3005 20285322 ~ 20289785 (-) True AMCG00016463
AMCG00016462 mRNA upstream 9985 20292302 ~ 20303074 (-) True AMCG00016462
AMCG00016459 mRNA upstream 52571 20334888 ~ 20339043 (-) True AMCG00016459
AMCG00016461 mRNA upstream 59763 20342080 ~ 20355124 (-) True AMCG00016461
AMCG00016464 mRNA upstream 74916 20357233 ~ 20362210 (-) True AMCG00016464
TU16905 other downstream 120089 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 1150255 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3394457 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 3172775 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3416832 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4028720 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4028720 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 4598831 24881148 ~ 24882098 (-) True G14305

Expression Profile