RNA id: AMCG00016457



Basic Information


Item Value
RNA id AMCG00016457
length 759
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00016457
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20308979 ~ 20316754 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aagacacaaaCATAGAGAGAGCTCAGCAGGCCAGGAGTGATGTTAGGCTGGGTGTCTATGTGTCTTGTGGCAGTGCTTGGCACGTGTGTTCTGAGGACTGGGGCGGCAGCGCGGCCTGGCCAAGACAAACAGAAAGATAACCCCATCGACAAGATCGCTGCCCAGGACAACCTCCAGCTGCCACAGCCTGTGTGTGCAGTCagattgtgtgtcagtgtgtctcctGCTGTGGCCAGCAGACACGTCTCAAGGAAAAGGGCTGGCTCACTCCACAGCGCCATCTTTCGACCAAAAGTCCTGGCAGCGACATGCTTCACAAAGGACCTGCAGTGCTGGGACATTCGCCAGGAGTATCAAACCATGAAGACTACAGGCCGCTTCCTTCTCAAAGGCCGTGGGGCTTCTAACAACATCGACATTGTGATTGGCGAGACAGACTACAGGTCCTACGCCATCCTGTATTACCAGAAACGTCGCAAGATCTCAGTCAAGCTCTACGGGAGGTCAACAGAAATCCCAGAAGATATCATAGACAAGTTTGAGCAGTCAGCACTCAATCAGAAGATCACCAAtgattttatttactatttCCCCAAATACGGCTTCTGCGAATCAGCGGATGAATTTCACATCCTGCATGAGTGACTCTGTCGGCTTCAGGCTCATGAAGATTGCATAGTGTTGAAGAAGCTGCAAGACAGGAGCACCAGAAGAGAGCTGGACACCGCTCATGGAAAAGTCTAtgacattgtttttcag

Function


GO: NA

KEGG:

id description
K03999 C8G; complement component 8 subunit gamma

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU16917 lncRNA upstream 19145 20287075 ~ 20289834 (+) True G13662
TU16913 lncRNA upstream 52959 20219443 ~ 20256020 (+) True G13659
TU16833 lncRNA upstream 276063 20031493 ~ 20032916 (+) True G13599
TU16825 lncRNA upstream 290893 20014944 ~ 20018086 (+) True G13593
TU16797 lncRNA upstream 429263 19875100 ~ 19879716 (+) False AMCG00016429
TU16940 lncRNA downstream 2263 20319017 ~ 20319339 (+) True G13681
TU16941 lncRNA downstream 25320 20342074 ~ 20344085 (+) True G13682
TU16943 lncRNA downstream 26670 20343424 ~ 20345072 (+) False G13682
TU16951 lncRNA downstream 76757 20393511 ~ 20403506 (+) True G13685
TU16972 lncRNA downstream 107383 20424137 ~ 20425842 (+) True G13700
AMCG00016448 mRNA upstream 182695 20104916 ~ 20126284 (+) True AMCG00016448
AMCG00016449 mRNA upstream 244357 20059343 ~ 20064622 (+) True AMCG00016449
AMCG00016450 mRNA upstream 294070 20010296 ~ 20014909 (+) True AMCG00016450
AMCG00016451 mRNA upstream 299120 20007997 ~ 20009859 (+) True AMCG00016451
AMCG00016441 mRNA upstream 303040 19998432 ~ 20005939 (+) True AMCG00016441
AMCG00016458 mRNA downstream 11951 20328705 ~ 20331775 (+) True AMCG00016458
AMCG00016456 mRNA downstream 33894 20350648 ~ 20353506 (+) True AMCG00016456
AMCG00016469 mRNA downstream 63859 20380613 ~ 20392489 (+) True AMCG00016469
AMCG00016467 mRNA downstream 91549 20408303 ~ 20419818 (+) True AMCG00016467
AMCG00016466 mRNA downstream 109739 20426493 ~ 20434211 (+) True AMCG00016466
TU16114 other upstream 3187047 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 3822976 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 3822976 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 3823831 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 5870373 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 3763263 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 4218264 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 4691208 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 4816444 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 4833729 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile