RNA id: AMCG00016458


Basic Information

Item Value
RNA id AMCG00016458
length 1058
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00016458
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20328705 ~ 20331775 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCAGATATCAGGCTTTCTTGTTTTGGACTCACTTATAAACCACAGACAGTTTGTTCCCTATAGCGTTTGTGACCAGCAGCTCAGTACAGCTTTCAAAGTCATGCTGTCACATGGAAAACAGTAAGAGACATCCCATACGGTTTCAGCATGGATTCCAGATTTTCTTCTGTGCTCAATAGCTAACAGATTCCAGTTACGAATGCCTGTCAGACAGCTATGGAGCAGCAGCAACTCCACTCTCTCTGACAACTCCCCAAACGCCAAAGAAGAGGCTTAACCATGACAAGCATGCTGCTGACTGCCCTGGGGGTGTTGCTCTGTGTGCTGGCCACCTCGGCCGATGTCCAGCCACAGAAAGACTTCAACCTGCAGAAGTTCTCAGGGAAATGGTACCTGATTGGATTTGCCACCAATGCACCATGGTTTGTGGCAAAGAAGACGGCTATGAAGCAGGGGGTAGTGGTGTTCACACCCACTGCAGGGGGTGACCTGGACATGAGCTATAGCAGCAAGAAGGCTGACGGGACCTGCTGGCAGGCTACACACCTGGCCACGAAGACGGAGACCCCTGGCCGTTTCACCTTCTTCAGCCAGCGGTGGGGCAACAACAATGACATGCGTATCGTGGAGTCAAAGTATGAGGAGTACACTATGGTGTACACCATCAAAACCAAGGGCGAGGACACCAGCACCCTGCTCAAGATTTACAGCCGCACAACGGAGCTGAGGCCTGAGCTGCTGCAGAAGTTCAGACAGTTCTGCATTGAGAACGGAATCGAGAAGGACAACATCGCCATCCTGCCTGTGAATGGAGTGAGTACCACGCCCTGTCAGCTGTGTACCCAACGTCCTTCCTCTTTGACCTATAATCTTTCCATGAGTTTGGGGCTGCCTCCCATCTTTGTTAATCAATACAACCCAGTGATTAAACCCAGCCGCCTGCCTTCTCCAGCCATGTCCAACATGGCTAACTGCTTATAGTCATACTGCTGAGCTGTGCCACACTACTATATGTACCTCTGTCTATTTTATACCTGCTGATCAGattctgtagtt

Function

GO:

id name namespace
GO:0001972 retinoic acid binding molecular_function
GO:0004667 prostaglandin-D synthase activity molecular_function

KEGG:

id description
K01830 PTGDS; prostaglandin-H2 D-isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16940 lncRNA upstream 9366 20319017 ~ 20319339 (+) True G13681
TU16917 lncRNA upstream 38871 20287075 ~ 20289834 (+) True G13662
TU16913 lncRNA upstream 72685 20219443 ~ 20256020 (+) True G13659
TU16833 lncRNA upstream 295789 20031493 ~ 20032916 (+) True G13599
TU16825 lncRNA upstream 310619 20014944 ~ 20018086 (+) True G13593
TU16941 lncRNA downstream 10299 20342074 ~ 20344085 (+) True G13682
TU16943 lncRNA downstream 11649 20343424 ~ 20345072 (+) False G13682
TU16951 lncRNA downstream 61736 20393511 ~ 20403506 (+) True G13685
TU16972 lncRNA downstream 92362 20424137 ~ 20425842 (+) True G13700
TU17090 lncRNA downstream 282970 20614745 ~ 20617697 (+) True G13791
AMCG00016457 mRNA upstream 11951 20308979 ~ 20316754 (+) True AMCG00016457
AMCG00016448 mRNA upstream 202421 20104916 ~ 20126284 (+) True AMCG00016448
AMCG00016449 mRNA upstream 264083 20059343 ~ 20064622 (+) True AMCG00016449
AMCG00016450 mRNA upstream 313796 20010296 ~ 20014909 (+) True AMCG00016450
AMCG00016451 mRNA upstream 318846 20007997 ~ 20009859 (+) True AMCG00016451
AMCG00016456 mRNA downstream 18873 20350648 ~ 20353506 (+) True AMCG00016456
AMCG00016469 mRNA downstream 48838 20380613 ~ 20392489 (+) True AMCG00016469
AMCG00016467 mRNA downstream 76528 20408303 ~ 20419818 (+) True AMCG00016467
AMCG00016466 mRNA downstream 94718 20426493 ~ 20434211 (+) True AMCG00016466
AMCG00016465 mRNA downstream 103992 20435767 ~ 20440084 (+) True AMCG00016465
TU16114 other upstream 3206773 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 3842702 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 3842702 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 3843557 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 5890099 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 3748242 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 4203243 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 4676187 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 4801423 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 4818708 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile