RNA id: AMCG00016459


Basic Information

Item Value
RNA id AMCG00016459
length 2100
RNA type mRNA
GC content 0.59
exon number 8
gene id AMCG00016459
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20334888 ~ 20339043 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGAAGATGGGCTTGATCTGAATGCACAGGAGCCGAAGATCATTTTTGATCGATCAGAGGCAGACGTGAGCGGCCATATTTCTGCGGGGGAGATTGTGGTGGAGCTGCAGGAGACAGTGTTTGTGTCGGGGGTGGATGGCTCCGATGTGTCCGTCCACAACTTCAGCCCTGAGGACCTGGACTCGGTGGTCATCCAGGATGCCATCGAAGACGTGGTGGCAGAGTACGTGCAGTGCGAGGACTCGGAGGCCGTGCTCATCGCCGAGGAGATGCTGGAGGCCGGCGTCGGGGAGGGGGACTCCGTGGAGCAGTGTGTGATCCCTGTAGGCAGCATGGTGTCTGAGGTGGAGACGGGGGCTGGGTGCACGGTGCAGGACAACGTCCTTGACGGAGATTGCATCGCGGAGCCTGAGGACGAGGCTGTGACAGACGCCGACGGCTCCCTCGCAGATATCCCAGTGGAGGCGCTGCAAGTAGACGTGGTCCCTGAGGAGGTCCTGGTGTCAAACTGTGCCCCCCAGGATGGCATGGACCCTGGgcaggaacagggctcctgtgAGAATTACCTCATGATCTCCTtggATGAGGCTAACAAGATGGTGCAGGATGGCAGTGAGGAGATCGCAGTAGGCCATGGCATGGAAGAGCAGAGCCAGCTGTCCAAGGACGACAGTGGGGAGGTCATCAAAGTGTACATCTTCAAGGCCGACTCGGGAGAAGATGATCTCGGGGGCACTGTAGACATTGAAGAGAGTGAGGTGGAGAATGACCACGGGGTGCAGCTGCTGGAGCAGCACGGGCGCGGCCCCAGAGATAAGATGGTGTACATGACGGTGGGGGGCTCCCAGCACAGCGAAGTGGACCTCAATGTGGCTGAGATGGCAGATGAAGTGTACATGGAGGTGGTGGTCGGGGGAGAGGAGGCGGTAGCACACGAGAGACAGTTTGACAACACCGTCCTGAGTAAAGACTTCATGCCAGTGGCCTGGGCAGCTGCCTATGGAAACGATGAGAGCGAGGGCTGCGAGAACCGGAATGGCGCAGCTAGTGCTCTGCTGCACATCGATGACTCGGTCAGCCCCGCAAAGGTGACCAAGCAGAAGACCAAGCAGAAGAGGAGGATTGATGCCAGGCAATTCCAGACAGCAATTATAATAGGGCCTTATGGGCAGCCTCTGACTGTCTATCCCTGTGTCCTTTGTGGCAAGAAGTTTAAGTCCCGAGGGTTTCTGAAGAGGCACATGAGAAACCACCATGAGGTTGTGAACAAGAAGAAGTACCAGTGCACTGACTGTGACTTCACCACCAACAAAAAGGTCAGCCTGCACAACCACATGGAGGTCCACAAGCTGACCAGCAAAGCAGAGAAGGCTGTGGAGTGTGAAGAGTGTGGGAAGGAGTTCTTCCATGCAGGGGCACTCTTCACCCACAAGGCACTGCACAGAGACAAAGGGGCCAGCAAGATGCACAACAAGGAGATGCCCTACAAGTGTGAGCGCTGCTTCCAGACCTTCTCGGAGGCCGAGGAGCTGTTGACCCACGCCTTGAGCCACGAGGAGGCGAAGACGCACCCGTGCGCACACTGCGACCACAAGAGCTCCAACTCCAGCGACTTGAAGCGGCACATCATCTCGGTGCACACCAAGGACTACCCCCACAAGTGCGACGTGTGCGCCAAGGGCTTCCACCGGCCCTCCGAGCTCAAGAAGCACATGACATCCCACCGCAGCAAGAAGCTGCACCAGTGCCGGCACTGCAACTTCAAGATCTCCGACCCCTTCGTGCTCAGCCGGCACATCCTGTCGGTGCACACCAAGGACCCGCCCTTCGCTGGCAAGCGCCGCAAGAGGACCTTCGGGCCGCGGGCGGAGCTGAAGAAAGGCGGCAGCAAGGTCCACCGGGAGCGGCGTGTCTACCAGTGCCAGTACTGCGACTACAGCACCTCCGACGCCTCTGGCTTCAAGCGCCATGTCATCTCCATCCACACCAAGGACTACCCCCACCGCTGTGAGTACTGCAGCAAGGGCTTCCGCCGGCCCTCCGAGAAGAACCAGCACATCATGAGGCACCACAAGGACATGGTGGTCGTTGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16939 lncRNA downstream 18309 20315742 ~ 20316579 (-) True G13680
TU16865 lncRNA downstream 329948 20003149 ~ 20004940 (-) True G13615
TU16616 lncRNA downstream 1076331 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 1077969 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 1081474 19165586 ~ 19253414 (-) True G13392
TU17050 lncRNA upstream 129203 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 147838 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 256286 20595329 ~ 20598765 (-) True G13789
TU17099 lncRNA upstream 291429 20630472 ~ 20636938 (-) False AMCG00016479
TU17108 lncRNA upstream 307793 20646836 ~ 20652268 (-) True G13806
AMCG00016462 mRNA downstream 31814 20292302 ~ 20303074 (-) True AMCG00016462
AMCG00016463 mRNA downstream 45103 20285322 ~ 20289785 (-) True AMCG00016463
AMCG00016455 mRNA downstream 52571 20255636 ~ 20282317 (-) True AMCG00016455
AMCG00016454 mRNA downstream 188587 20145813 ~ 20146301 (-) True AMCG00016454
AMCG00016453 mRNA downstream 199404 20128908 ~ 20135484 (-) True AMCG00016453
AMCG00016461 mRNA upstream 3037 20342080 ~ 20355124 (-) True AMCG00016461
AMCG00016464 mRNA upstream 18190 20357233 ~ 20362210 (-) True AMCG00016464
AMCG00016460 mRNA upstream 33511 20372554 ~ 20379132 (-) True AMCG00016460
AMCG00016473 mRNA upstream 54554 20393597 ~ 20398749 (-) True AMCG00016473
AMCG00016472 mRNA upstream 62345 20401388 ~ 20405776 (-) True AMCG00016472
TU16905 other downstream 199341 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 1229507 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3473709 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 3116049 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3360106 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 3971994 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 3971994 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 4542105 24881148 ~ 24882098 (-) True G14305

Expression Profile