RNA id: AMCG00016461


Basic Information

Item Value
RNA id AMCG00016461
length 6038
RNA type mRNA
GC content 0.51
exon number 16
gene id AMCG00016461
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20342080 ~ 20355124 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctctctctctctctctctctctctctctctctcacacacacacacaccctcacacacaggCCCACAGCTACAGACAGAAGCCTACCACTTGTTCAACATGAAACAATTGGCGTTGTTTATGTTCATGGATTTTAAATCAAACTCCTGTAAGAAATGCAGCAGTTGCTTCTGCAGTATACAGGCCTTATggctttttctgttgttgttttatatattaatatatataaagccaCATGATTGACCCACACCAATCAATGGTCAAGACATTATTACTGACCACCGAAGACTGAGATTACACGTGAAATTTGCAACTGAAGAAAAAGTATGCATATAAATAATTGGGTATTTGTATGTAAGTAAAGGCTGTGAAAGCTGTGCCGGAAGCCAGTGGTACGTCTTTCAATGCTCGCTAtaacagacaggcagacagattgACAAAGGCACAGCCATCTCCTCCTGCTGATCAGGAAGCAGACGCAGCCAGAACGGTTTTAACATACAAGTGTAACGGCAATGCCAGCCAACAACAGAAAGAGGTGCAGAGAATTCTGATCTCCCTGCATTATCACCGCCATCTCCAGGAGAGACTACGGCTGCGTTCAATATTTCTTCGGTTCTAATGGGTCGTTTTCACTTAACAGCAGCTGAAACGGTTCTTAAAGAGACGGAAAGTGAGGTCGTTTCCTCAGAGGATTTCCCTTATGAATCAGCAGGATCCTGATAACACAACTGTCCGGCGGCGGAGGAGGAAGAGTAGCAGCAGTAGGCAGCCCATTGCAGGCAGGGTCTTGCAGCTCAAGTCACTGTGACCCTCCTGCACTGTGCCCCTTAGTCAATATTGATTTCCTCTGTGTTTTCACTGGGGTGGCCAAGGCTGGTGAGTTCACGCTGCTATCTGCTCAGTCACCTTCTATAAACTACATTTCACTACCATCCCTACTGCCTGTCCCACCACCTCACTGCACAGGCTGGTCTTTGCCCATCAAGACCTACAGAAGACTTCTACTTCTCCAACACGGACAAGATATAGTAAACTATTTAGAACAGCAGGAAGAAGCTTATTATGGCAAGGGCAGGAAAAGCTAATGCaccttttataaaaaaacacaagcagaccCCTAAGCTATTTTCATTGAGGTTGGGATAATGACTCCACTAGGCCGTTGCAGATGACTTACCTTGAGATATTTATAGGAAATAGATTTtgcccaaaaaaacaaaagaaggaatctgcacagacatttatttattttttattgttattgtttttggaaaattcatattttgaaagaatGAGAGTTGATCTGAGGATGAGGCATAAACTGAGATTACTCACCTTCCTCTGCCCCCCAAAAACTATTCATATCTCATAACAACCCATGGACAAATGGGGGGTTATTTTGTTTGACTATACCATAGCAATAACCACtgacctattttatttttgtattttgttttgagaaaacaaatattttgtttattcttttttttttaacaattttctttttcctatgaaaaaaataatcaaccaCTGGGTTTTTAAAACGCAAAAGGAGTCTCaggaacaagagagagaaagagtgagaaagagggagagtgaggCAGAGTGTGTGCTCCTCAGCTGCAGCGCCTCACATGCTCCAGTACGTACTCAGGGAAGTGGAGACTGCATACTTGCAAGCCATCCAACTTGCAAGGCATCCTGGGATATTCGTCCTCCTTCCACTTGTTCTCCTCAGGGTCGAAGGTCAGGATGGAGTCGCTGTAGTGGCCATTGTAGCACAGCCCTCCCAAGACCATGATCTGCTTGTCCAGGACGGCCACGCCGTGCCCGCTGCGGCCGATGGGCATGGAGGCCAGGATGGTCCACTCGTCCGTCTCGGGGTCGTACACCTCCGTGGACGGACAGCCCTGCGACTCGAAGGAGGCACGCAGGATGACGCACACGCCGCCGAAGACGTACAGTTTGCCGTTGTAGGATATCATCTTGTGGAAGCAGCGGGCGTAGTTCATCTTGGACTTGTTCTCCCAGCAGTTCGTGACCACCTGCGTCCTGCGCGTGCGGTGCTCCGTCAGGCCCTCCTTGCTGgggtcaaacacacacacctgcttggaggtggaggaggacgTGATGCCGCCTGTGATGTAAAGTTTGCCGTTGAGCACTGTGCCCTCGTGGCCGTACTTGTTAACGGGGTAAGGGTCCACAAACTCCCATTTGTCCTCCACGATGTCATAGCGCTCTGTGGAGTAGAAAGTCTCGTCCCTCGTCCGGCCTGCCACGGCATAGATGTACTTCCCGATCACTCCCACCGCAAACTCTGAGCGCGGCACCGACATGTCCGCCATGCGCAGCCATGAGTTCTGCCGCGGGTCGTAACGGAACACTTTGGAGGAGGCGTGGAACTCGCCGTCCGGGCCCAGCTCCTCCCCACCCAGCAGGAACACAAAGTTATTAACGATGGCCAGACAGTCAGGCCGCAACGGCACCTGGGGGCCTTCCAGCTCCCACCAGACCTTGGGCTTGTGCAGCAGCAGGATCTTGCTATTCACCATGCTGTGGCCAATCATGCCGCGGAATACGGCAGTCTGCGGCCGGATGGACCGGATGCGGTTTGACTTCATGTCCATCAGGGGCTGCTCGTTCACACCGTGGAAGTAGTTGAGCGCCTGGTCAACCTCATGCCGCAGTTGCCGGGAGTAGCGGTAGAACTCTGAGGTCTTCACCTGCATAGAAAACGTTGGAGGGCGTCATGAGGCAGAAGCGCACATTCTGTATGACGGAGTCGGTGTGGCGCCAGCGCCGGCGGTCGTGCCTCAGCCAGGCCTGAACTGCCTCGTAAAGCTCAATCTCGGGGAAGCGGCTCAGCTGGTCACTGTCCAAGTAGGCCATCAACTTCTCGAAGCTAAGGTAGGACAGGAAGTCCGGCCGGGACATGAGCGGCACGAAGTTCTCCAGCAGGAAGGAGTCCAGCTGCTCCTGCACGCCCTCAATGTTGACACTGAAGTCCTCCAGCAGCCTCATGACCTCGGCGCAGTTATCCAGGCAGATCTTGGCCAGCAGGAAGGAGCAGCAGAACTCCACCACCTCGGTCAGCTGCACGTACATGGCGGCCTGCAGGATCTCATGCACCGTGAGCATGCTGAGCTCCAGCGTGCCGTAGTACATGAACTGCAGCACGTGGCTGAAGCCGGTGGCCGTCAGCCCCTTCAGGTGGATCTTGTCCTGGTCGCGCTCGCGCATGTCGGCTGTGAACATGATGCGGAAGTAGTCGCTCTGTGTGGCCAGCAGGGCTTTGTGCGCCTGGAAGTGATGCTCCTCAATCAGCAGCGTGACGTCCAGCAGCAGCCGCTCCTCGTACAGTGCCCGGAACCCCGACGACACGCTGCTGTCGTGGTCCGACGAGATGTACACTTCCACATCCCCTGCCATTAATGACCTGGccgGTGCATCCAGGGCAAACGTGGGGTTTGCAGACTGTGTAATGTGGGGAAGTTCACATTTTCTCTGCTTGTGCTTTCCCTGCTCTCGGCGATGCGGCTCCACACAACCCCTCTTCGACCAGGGAGCTCGGGCACCTTCGGACATCGATTAACAGTGTATATCCGAATTAAGAGGACCGGGCTTTAAACACGCATGACCCTCGATGCCTTTATCTGCCTTTGCCGTTTTTTCCGGGAACATTATTAACAGTGGATAACCCAACACTGTTTACCTCCGTCTTTCAGAGCAACCACAGACGCCATATTCTCGACTGCACTGACGTCATTTCCTGCAATCCGCCAGAGCGGACGGAACCGTCCCCAGCTGCAGCGGGTCGGCTCTGCTCGGACTAGGGCCACGTTGTCTGccgtttctgttttctttttgtttaatcCTCACATCCCTTATTTCGGTTACAATGGCGTGTAACTAACAATAGgcctcataagaacagtgtaaacTAAAATGATTTATTGATACAATGTTTTCCCGTTTTTTGTACAGTTCTCTCCTATACTAATTGTACAGCCGGGATGGAATCACAAACATGTCCGTTTTCCCTTAATCAACTGTATGAGTTTATTACGGAAGCCTATATTTTAATGCCACCCAAAACTTTTGCAATTGAATGCAATAGTTGCAACATAGGCTACATTATATTAATAGGATTctgacacacattttaaaatcgaGCATTTTCATTTAAGATGGCGGGTGACGAGTCAGGAGTAACGCTGGGGCAGCCCCATCTTTCCAAACAAGATCTCAATACTCTGGATGTGTCCAAACTAACTCCCCTCTCTCAAGAAATCATCAGTAGGCAAGCCACAATTAACATTGgcACAATTGGTCATGTAGCTCACGGGAAATCCACAGTAGTGAAAGCGATTTCAGGTGTTCACACTGTCCGATTTAAGAATGAATTGGAGAGGAATATCACTATCAAGCTTGGCTATGCAAATGCAAAGGTGTACAAACTCGATGACCCCAGCTGCCCCCGGCCTGAATGTTACCGGTCGTGTGGCAGCAGCACTCCAGACGAGTTCTCCACAGACATCCCTGGGACCAAGGGCAACTTCAAACTCGTCAGACACGTGTCATTTGTGGACTGTCCCGGCCACGACATCCTCATGGCTACCATGCTGAACGGAGCTGCAGTGATGGACGCCGCCCTGCTGTTGATAGCCGGGAACGAGTCGTGCCCTCAGCCCCAGACCTCCGAGCATCTGGCTGCCATCGAGATCATGAAGCTGAAACACATCCTGATTCTGCAGAATAAGATTGACCTGGTGAAGGAGAGTCAGGCTAAGGAGCAGTACGAGCAGATCCTGGCATTCGTGCAGGGCACTGTGGCGGAGGGAGCTCCCATCATCCCCATCTCGGCGCAGCTGAAGTATAACATCGAGGTGGTGTGCGAGTACATCGTGAAAAAGATCCCCGTGCCTATCCGGGACTTCATATCCGAGCCACGCCTCATCGTGATCCGGTCGTTTGATGTGAACAAGCCTGGTTGTGAGGTGGACGACCTGAAGGGCGGAGTGGCTGGAGGCAGTATATTGAAAGGAGTGCTGAAGGTGGGTCAGGAGATCGAGGTGAGGCCAGGTATTGTGTCCAAAGACCACGAGGGGAAGCTCATGTGCAAGCCCATCTTCTCCAAAATTGTCTCGCTGTTTGCAGAGCACAATGACCTGCAGTACGCTGCTCCTGGGGGCCTCATCGgtgtgGGCACGAAGATCGATCCCACACTGTGCCGGGCGGACCGTATGGTGGGCCAGGTCCTGGGGGCTGTGGGCGCACTCCCCGAGATCTTTACCGAGCTGGAGATCTCCTACTTCCTCCTGCGCAGACTGCTGGGTGTGCGCACTGAGGGCGACAAGAAGGCAGCCAAGGTCCAAAAGCTGTCTAAGAATGAGGTTCTGATGGTGAACATCGGGTCCCTGTCGACGGGCGGCAGAGTAAGCGCGGTGAAGGCTGACCTTGCCAAGATTGTGCTGACCAACCCCGTGTGCACCGAGGTGGGGGAGAAGATCGCCTTGAGCCGGAGAGTGGAGAAGCATTGGCGTTTAATCGGCTGGGGTCAGATCAGGAGAGGCGTAACAATCAAGCCCACCGTAGACGATGACTGAGAGTCGGCCGGACCACCGTGTACCTGGCACCCCACCCGACGCCTGTCCAACACTGCAGAGCTGTGGTGAATACCCACCCGGGCTCTGGACTGGAATCCTAGggttctgcattttaaaaaggagtTGTGTATCTTCCATTACAAATTTGCCTAATTTATACATACAAGAGGTTAGTTTTGGGATCACGTGGAGGTTTGATAGTATCGCCAACAGCTGTCATTGAAAACCAATTAAAACGTTTTGAACAAATGCGTGCTCTGGTCCATTTCTGTTCCCATGTGCTGTAATTTCTAAACTAATTCTTGTTGTTCAGGCTTTTGTAATTTCATGCTGTCATACACCATTGCACTTCCTATAAATGACTCGTGAAATCGCACATGAAGATTGTCTGTTCTATTcaccaagaaaaataataaacgcCAGTACA

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03242 EIF2S3; translation initiation factor 2 subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16939 lncRNA downstream 25501 20315742 ~ 20316579 (-) True G13680
TU16865 lncRNA downstream 337140 20003149 ~ 20004940 (-) True G13615
TU16616 lncRNA downstream 1083523 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 1085161 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 1088666 19165586 ~ 19253414 (-) True G13392
TU17050 lncRNA upstream 113122 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 131757 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 240205 20595329 ~ 20598765 (-) True G13789
TU17099 lncRNA upstream 275348 20630472 ~ 20636938 (-) False AMCG00016479
TU17108 lncRNA upstream 291712 20646836 ~ 20652268 (-) True G13806
AMCG00016459 mRNA downstream 3037 20334888 ~ 20339043 (-) True AMCG00016459
AMCG00016462 mRNA downstream 39006 20292302 ~ 20303074 (-) True AMCG00016462
AMCG00016463 mRNA downstream 52295 20285322 ~ 20289785 (-) True AMCG00016463
AMCG00016455 mRNA downstream 59763 20255636 ~ 20282317 (-) True AMCG00016455
AMCG00016454 mRNA downstream 195779 20145813 ~ 20146301 (-) True AMCG00016454
AMCG00016464 mRNA upstream 2109 20357233 ~ 20362210 (-) True AMCG00016464
AMCG00016460 mRNA upstream 17430 20372554 ~ 20379132 (-) True AMCG00016460
AMCG00016473 mRNA upstream 38473 20393597 ~ 20398749 (-) True AMCG00016473
AMCG00016472 mRNA upstream 46264 20401388 ~ 20405776 (-) True AMCG00016472
AMCG00016470 mRNA upstream 66830 20421954 ~ 20425750 (-) True AMCG00016470
TU16905 other downstream 206533 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 1236699 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3480901 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 3099968 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3344025 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 3955913 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 3955913 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 4526024 24881148 ~ 24882098 (-) True G14305

Expression Profile