RNA id: AMCG00016462


Basic Information

Item Value
RNA id AMCG00016462
length 2453
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00016462
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20292302 ~ 20303074 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGCGCATGCGCAATAGCACACCGGCAACTGGACGCGGCCTGGGACAAGAGACGCAATTTGAGGAGATTGGAAACAGAGATTAGACACGACAGCAAGGTGTGAGGGGGGAGACGAGCGACCCTGAAATCGGACACTCAAAACTGCAATCCACACACGTGTGTCATtaacacaattacaatacagATACTCCCATCATGAGCTCAGGAAAGGACAACGTGCGTCTCAAGAGCTACAAGAACAAGTCTCTGAACCCAGaggagatgaggaggaggagggaggaggaagggcTGCAGCTCCGCAAACAGAAGAAAGACGAACAGGCAGGGATCATCTCAGAGGACATGATCCAGATGATCTTCTCCAGCGCTCCCGAGCAGCAGCTCATGGGCACACAGCGCTTCAGGAAGCTGCTGTCTAAAGAGCCCAACCCTCCCATTGATGAGGTGATTGCTTCGTCTGGTGTGGTGGAGAGGTTTGTGGAGTTCCTcaagaggagagagaactgCACCCTGCAGTTTGAAGCGGCGTGGGTGCTGACCAACATCGCATCCGGGACGTCCCACCAGACGAGGGTGGTGATCCAGGCAGGGGCCGTGCCGATCTTCATTGAGATGCTGGCCTCGGACTTTGAGGACGTGCAGGAGCAGGCTGTGTGGGCGCTTGGGAACATCGCAGGCGACAGCACAGTGTGCAGGGACTACGTGCTGGACTGCAACATCCTGCCATCTCTGCTGCAGTTACTGGCCAAGCAGAacaggctgatgatgatgaggaaCGCTGTGTGGGCGCTGTCCAACCTGTGCCGAGGCAAGAACCCACCTCCCGACTTCACCAAGGTGTCGCCCTGTCTCAGTGTGCTGTCCTGGCTCCTGTTTGTAAACGACACGGACGTGCTGGCAGATGCCTGCTGGGCCTTGTCGTACCTCTCTGATGGACCCAACGACAAGATCCAGGCCGTCATTGATGCAGGAGTTTGCAGGCAGCTGGTCGAACTTCTGATGCACAGTGATTACAAGGTGGTCTCCCCAGCACTCCGAGCAGTGGGCAACATCGTCACAGGAGATGATGTTCAGACTCAGgtCATTCTAAACTGCTCAGCCCTGCAGAGCCTGTTGCACTTGCTGAGCAGCCCCAAGGAGTCCATCAAAAAAGAGGCGTGCTGGACAATATCCAACATCACGGCGGGAAACAGGGCACAGATTCAGATGGTAATAGATGCCAACATACTGCCAGCTCTGATAAACATCCTCCAAGTGGCAGAGTTCAGGACAAGGAAGGAGGCCGCCTGGGCCATTACCAATGCCACGTCGGGGGGGTCTGCGGAACAGATACGGTACCTGGTGGAGATGGGCTGTGTGAAGCCACTGTGTGACCTGCTGACACTGATGGACCCGAAGGTCGTGCAGGTGGCTCTGAACGGGTTGGAGAACATCCTGCGGCTGGGGGAGCAGGAGGCTAAGCGGAGCGGCGGCATCAACCCATATTGCGCTCCCATCGAGGAGGCCTACGGCCTGGACAAGATCGAGTTCCTGCAGGGTCATGAGAACCAAGAGATCTACCAGAAGGCATTTGACCTGATCGAGCATTACTTCAACCCCGATGACGAGGATGCCAGCATCGCCCCCTCGGTggacctgcagcagcagcagtataTCTTCCAGCAGTGTGAGGCTCCCATGGAAGGCTTCCAGCTTTaatcctctctcctctcctgctctctctcctcctcaaGCAGTTGATCAGCAGCCTGCCTGGAGAGGACGTGGTAGCTCTGCCATGGCACAGAGAGGGCCTTCCTTTGTCCAGGAGGAATGTTTTGAAGGCAGTCAGTTGGCTCATCCCACACAGTCTGTCCTTTCCCCAGGATTATATcttcctttttaaatacatattattgtgattattttttataattaatcagACAATAGAACAGGCTCCAGCCTCCCCTATAGCACATGCACTGGACACCCTTCCCTCACGGACAGTGAACCGCCCTGATGGACCTGTGGACACTGAAGGATCGTGTCTGGTTGCCCAGCTTCAAGGATCACGGCACCCTTTCGCCCATGATGAAGTGCTGTCTGTCAGCGACTCAGTTTGATCTGGTTTGCAAggacaattttttatttatttttccaaaatcaCTTGAACTAAACACTGGATTGACTTTGCTATTTGTGAAGGGTCGATTTTTCAAGGATATTACTTTCAATTCAAGACTGACTATTGCCACTGACTGAGAAGCAAAACATAGTGTGTGGAGATCTACTCTCTGACAAACATCTCCTATGTCTACAATACATAAACTGAAAGTTACCAGAATGAATGCCCAGGCATTAATTACATTGATAAACTTAAGGAAACCCTGACAGAAATAGGAAAAGGaagtggctttttttttttttttttttttttttttttttttttgtccgtTCTCCTTTGTGGAATGTG

Function

GO: NA

KEGG:

id description
K23940 KPNA1; importin subunit alpha-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16865 lncRNA downstream 287362 20003149 ~ 20004940 (-) True G13615
TU16616 lncRNA downstream 1033745 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 1035383 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 1038888 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 1203670 19088224 ~ 19088632 (-) True G13366
TU16939 lncRNA upstream 12668 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 165172 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 183807 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 292255 20595329 ~ 20598765 (-) True G13789
TU17099 lncRNA upstream 327398 20630472 ~ 20636938 (-) False AMCG00016479
AMCG00016463 mRNA downstream 2517 20285322 ~ 20289785 (-) True AMCG00016463
AMCG00016455 mRNA downstream 9985 20255636 ~ 20282317 (-) True AMCG00016455
AMCG00016454 mRNA downstream 146001 20145813 ~ 20146301 (-) True AMCG00016454
AMCG00016453 mRNA downstream 156818 20128908 ~ 20135484 (-) True AMCG00016453
AMCG00016452 mRNA downstream 197377 20089569 ~ 20094925 (-) True AMCG00016452
AMCG00016459 mRNA upstream 31814 20334888 ~ 20339043 (-) True AMCG00016459
AMCG00016461 mRNA upstream 39006 20342080 ~ 20355124 (-) True AMCG00016461
AMCG00016464 mRNA upstream 54159 20357233 ~ 20362210 (-) True AMCG00016464
AMCG00016460 mRNA upstream 69480 20372554 ~ 20379132 (-) True AMCG00016460
AMCG00016473 mRNA upstream 90523 20393597 ~ 20398749 (-) True AMCG00016473
TU16905 other downstream 156755 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 1186921 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3431123 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 3152018 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3396075 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4007963 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4007963 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 4578074 24881148 ~ 24882098 (-) True G14305

Expression Profile