RNA id: AMCG00016463


Basic Information

Item Value
RNA id AMCG00016463
length 2112
RNA type mRNA
GC content 0.38
exon number 5
gene id AMCG00016463
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20285322 ~ 20289785 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACAGCGAGGGTAGCCAATCACGACGCCCCAGGTCACTGTGAAAGAACAGGAAGAAAAGATGGCGGCGAAAAACGGGAAGAGTGGTCTCCTGGAAAAATGGAGGATCGATGAGAAGCCGGTGAAGATCGATAAATGGGATGGAGCTGCTGTGAAGAACTCTCTGGATGATGCTGCCAAGAAGGTACTTTTAGAGAAGTACGGCTACGTTGAGAACTTCAGCCTCATTGATGGGCGCCTCATCATCTGCACAGTGTCGTGCCTCTTTGCCATCGTGGCGCTGGTGTGGGACTATCTCCATCCGTTCCCTGAGTCGAAACCTGTTCTGGCATGCTGTGTTATATCttattttataatgatGGGTATTCTCACCCTGTACACCTCCTACAAGGAAAAAAGCATCTTCTTGGTTGCGGTTCAGAAAGACCCAACTGGCTTAGACCCTGACCGGATCTGGCAGCTCTCTTCAAGTCTCAAAAGGTTTGATGACCAGTACACTCTTAGAATGACCTTTATTGATGGAAAAAAGAAGCAGCAAAGGGAGCTGGAGTTTACAAAGTCGGTGGGGACATTCTTTGACGAAAATGGGACGTTGGTGATGGACCAGTATGAGAGAAACGTGTCTAAACTTCATGACAGTCTGGCGATGGAAAAGAAACTCAAATAAAGTTTTCCGAAACCCAGTACACACCAGCCTCATTATAACTCAACCCTGCAACATGAGAACCACAGAAGATGCTTCTGTTGTGTAGTCTCGATTGTGTTCAGGTTATCTACTGAACTGTTGTCATGGCTGTCTAATTGATGACAGACTcagtacttttgttttgtttttagttatcGACCACAACAATGTATAAATGCTCATTAGTCCATGAGCTGAATCCTAGCTTCATTGTCTTTAATGAGATTAATGAACAGGAGAGAAATTGGGAAGTAGACTTAAATTGCAAAACTCATAAATTTTGTGAACTTTATCTGCTTTGGGTTATTATAGGTTCCCCAGTGACATTTAAGGACAAACTATGTTCAGTTTAACTTATAGATGAAATACCTTCCTGTAATGGGTCTGTTCAGTAGCTTAGCATTATagattgtatttacatttgttttgccttgAAAGTTTAAATGGTGCTCCATTCTATTTAAGGGACAGTAGTGCTATTGGAGAACTTTCTGTGTAAAAGAATGCTAAATGATTTGTGTtactaacaaaaaaacacttaactGGACCGAATGGAATATCTGAAAACCTGGCAGAACATCATTGCCATTTCTGAAGCGTATACAATTCAAATTGAGAGAACACATCTTGAAtttgtggtcactgagccttaTAATGAGAATGGGGTGTATGacttgaattatgtttttttttttttgcttgcattttttttttttttttgttatgttcttgacagtgttttgtccTGAAAGCCTTactcagtttaatttttttttttaaatatatatataaaccatgcTCTACCACCTTATAGTCCTATGAATGTCATATTATGACTACAGGTTTTCTAAATGGGCTTTAAGGACAAAGTATAAATCTCAAAAAGGGACTGTATCCTGATCCATTGCCTCCTTTATGCACATTATAATGGTTAGCGTGTATGTAAAGGATGGACCACAGGTTTTCATGATCTGATCTGTATGTATTGGGTAGTGatggattcaaataaataaactgaaatttaaatgcTGAGCATACACTATGCATTGCAATGTAGATTAacagtttcatatttaaaacaaacattcgTGCAGACTGTGACGGTTTTTGCTGCATAATAAATAACCTTAtctttcacaaaatataaatacatagttgtaatagctttttctttttgttcaacATCTGTATATCCAACATGTAGAATTCAGAATACGTAATAGGTCAATGATGTGTGAGGATGCAGTTTCTTTTTGCTAACTTTTTGTcccagcaacacacacacaactcacctttttatatatttatttccagtgAATTCTATTGAACCCCTATCGGTTTGATGGTTGTATACTGATCTTTTGCTTTAGCTTCCTGTTATGTACTTCACAGGcgatgtataaataaaaagacaatggcatttttata

Function

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0006508 proteolysis biological_process
GO:0005787 signal peptidase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K12947 SPCS2, SPC2; signal peptidase complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16865 lncRNA downstream 280382 20003149 ~ 20004940 (-) True G13615
TU16616 lncRNA downstream 1026765 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 1028403 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 1031908 19165586 ~ 19253414 (-) True G13392
TU16555 lncRNA downstream 1196690 19088224 ~ 19088632 (-) True G13366
TU16939 lncRNA upstream 25957 20315742 ~ 20316579 (-) True G13680
TU17050 lncRNA upstream 178461 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 197096 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 305544 20595329 ~ 20598765 (-) True G13789
TU17099 lncRNA upstream 340687 20630472 ~ 20636938 (-) False AMCG00016479
AMCG00016455 mRNA downstream 3005 20255636 ~ 20282317 (-) True AMCG00016455
AMCG00016454 mRNA downstream 139021 20145813 ~ 20146301 (-) True AMCG00016454
AMCG00016453 mRNA downstream 149838 20128908 ~ 20135484 (-) True AMCG00016453
AMCG00016452 mRNA downstream 190397 20089569 ~ 20094925 (-) True AMCG00016452
AMCG00016447 mRNA downstream 202067 20082654 ~ 20083255 (-) True AMCG00016447
AMCG00016462 mRNA upstream 2517 20292302 ~ 20303074 (-) True AMCG00016462
AMCG00016459 mRNA upstream 45103 20334888 ~ 20339043 (-) True AMCG00016459
AMCG00016461 mRNA upstream 52295 20342080 ~ 20355124 (-) True AMCG00016461
AMCG00016464 mRNA upstream 67448 20357233 ~ 20362210 (-) True AMCG00016464
AMCG00016460 mRNA upstream 82769 20372554 ~ 20379132 (-) True AMCG00016460
TU16905 other downstream 149775 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 1179941 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3424143 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 3165307 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3409364 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 4021252 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 4021252 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 4591363 24881148 ~ 24882098 (-) True G14305

Expression Profile