RNA id: AMCG00016465


Basic Information

Item Value
RNA id AMCG00016465
length 2160
RNA type mRNA
GC content 0.62
exon number 6
gene id AMCG00016465
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20435767 ~ 20440084 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGTATTTAATAGGGACGACAGCAGATGCAGCGAGCCGCTGAAGACCCACATTCAGAACTCGCGGGAGCTGCTGGTGGAGTCCATGTACAACATCGCGCCACTGCTGGACCACATGATTGCCACGCACCTCCTGACCGAGGACAACTACTACGACGTGATCGCCGAGAACACACCCAAGAACAAGGTCCGCAAGCTGCTGGAGGTGGTGCAGCACCAGATGGATGAGGACAAGGCCCTGCACTTCCTAGATTGCCTGAAGAAATGCCGGAAGGACTATCCCCGATTGCGAGACTGGCTCAACACTGATCCCAAACAGAGACTGCGGGCGCAGTTCAGTGAGCTTTGCAGCCGTTTGGGCTACCTGGTCCTACCCTTGTCCCTGCAGCTGTTCTCGGGAGAGGTGCTGTCGCAGTTCGAGGTGGACCAGGTGCAGGCCTGTCCCACCCCCTTCCTGCAGAGCCAAAAGCTCCTGAGCCTGTGCCTGGCGCGGGGGGAGGCTGCCTGCCAACGATTCTACCAGGCCCTGCACTCCCAGGACAGCTTCCTGGCTACGGCCATTGACGACGCTTCAGTGGTAACCAGATGTTCAGTAGCTGTAGAGGAAACAAACCCCCTTGGAGACCATGTCCTCCGACAGGTGATTGAGCAGCTGGGCGTGGCGCCGGACTCTAGGATGACTCTGAACGTGTGTGAGCTGGGCACGGTGCTGGGCCTGCCACGCCAGGTGGTCCGGGAGTGTCTGCTGGAGCTGGAGAGCATTGAGGACCTGCCACAGCTGGCTGCCCTGGTGCACTGCTTCCTGGAGAAAACGCGGGACCCCGCCCGGCTCCTGAGCAAGCTGGCCGCCTGCCACACCAAGAGCCTGATGCTGTCTGAGAGGGGCACACTAGTGCTGGAGTTGCTGCAGGAAGCCGCAGCCCTTCTTGGCAGTGGCCAGAAGGAGGAGATTCAGAAGTGCTGGAACATCTTCAGCTTCCTGCTGTGGGACTGCCTGGCCAAGGTGGAGGAGGACCCCACGGCAGCGCCCTGGCCGGGGCATCTGGGTGCTGTGCAGCAGCTAAGGGAGAGTGGGCGGGTGGACCCGGCCCTggcacaggagctgcaggagtGCTGGACAGATGGGATGGCAGAGAGCCTCCTGCAGAGCCTGCGTGTCCTGGCTCAACTGCTGAAGGACATGCACCCCCATCTGGACGCTGCGAAATTCACCCTTCAGCTGCAGGGCGAGGTGTACCACTGCAGGCCGCGCTTCCTGAACAGGGTCACGCGCTTCGTTGGCCTGTCCACCCGAACCATCTACAGGGTGCTGCCACGTAACGGACCCCAGTGTCTGAAGATGGACCCGGACTCGTTGCTTGACAGAGCCGCAGTGGCCGCTCAGTATGAAGCCATTTGCCTCCAAATGGCTCGCCTGCTGGCCAGGGTGGCTCCACAGGGGCACAGCAGCGCCCTGACGCAGGCGGCTGGACTCTCGGAAGCACTGCAGGAGATCCAGTCGACCCTTTCCCAGCCGAAGTTCGGGTCGGACGCCTTCGATACTGGTGTCAAACACTGCATCCTGTCCGTGGCCCAGTTCGACCCCGTGACAGCGGGCGTGCACTCGCTGGTAAACCTGCACAGCCACACGCTGCAGCTCCTGGGGGAGTACCTGAGGAGCAGCGACAGGCACTCCTTCCAGTTTGTCCCGGAGGCCGTGCGGATGGTGAGCAGCAGGGCGGAGCTGCGAGGCGTTCGCAGTGAGAGGGGCCCTGTGGCCATGGACGGCGGGGTGGAGGAAGTCTTTCGGTTCTCAATGTCGGAGCCGGCCTCCTTCCTGCTGTGGTTGTCCTGCCATGGCTACAGAGACCAGGAGTACTTCCAGAGCAGCCAGCCGCGCTCGTTCCACATCTCGGGCCTGTCGGACTCCGCCCTGGATGAGTTGGAGAGCCAAGGAGCTGTGGTGCTGGCTGTTGACCGGGGGCACGTGTGGCTCAGGGAGGGGAGCCAGGATGGGCTGGGCAGCAGGTTGCAGGCTTTCGCAGAGCGGCACAATGCCGTGCTGGAGGAAGGCAGCTGCTGTGTCCTCATTACCACCACCGGGGAGGAGTGTGAAGTCAAGGTCACGTTCAAGCATGGAAAGATCTCGGCCACAACAGAGAACTGCAGTGTCCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16972 lncRNA upstream 9925 20424137 ~ 20425842 (+) True G13700
TU16951 lncRNA upstream 32261 20393511 ~ 20403506 (+) True G13685
TU16943 lncRNA upstream 90695 20343424 ~ 20345072 (+) False G13682
TU16941 lncRNA upstream 91682 20342074 ~ 20344085 (+) True G13682
TU16940 lncRNA upstream 116428 20319017 ~ 20319339 (+) True G13681
TU17090 lncRNA downstream 174661 20614745 ~ 20617697 (+) True G13791
TU17100 lncRNA downstream 206751 20646835 ~ 20652272 (+) True G13798
TU17101 lncRNA downstream 213586 20653670 ~ 20655615 (+) True G13799
TU17170 lncRNA downstream 1355178 21795262 ~ 21832148 (+) False AMCG00016490
TU17191 lncRNA downstream 1482069 21922153 ~ 21922461 (+) True G13873
AMCG00016466 mRNA upstream 1556 20426493 ~ 20434211 (+) True AMCG00016466
AMCG00016467 mRNA upstream 15949 20408303 ~ 20419818 (+) True AMCG00016467
AMCG00016469 mRNA upstream 43278 20380613 ~ 20392489 (+) True AMCG00016469
AMCG00016456 mRNA upstream 82261 20350648 ~ 20353506 (+) True AMCG00016456
AMCG00016458 mRNA upstream 103992 20328705 ~ 20331775 (+) True AMCG00016458
AMCG00016468 mRNA downstream 8266 20448350 ~ 20466290 (+) True AMCG00016468
AMCG00016475 mRNA downstream 37971 20478055 ~ 20482996 (+) True AMCG00016475
AMCG00016474 mRNA downstream 59214 20499298 ~ 20502189 (+) True AMCG00016474
AMCG00016478 mRNA downstream 141862 20581946 ~ 20594925 (+) True AMCG00016478
AMCG00016482 mRNA downstream 432309 20872393 ~ 20876476 (+) True AMCG00016482
TU16114 other upstream 3313835 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 3949764 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 3949764 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 3950619 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 5997161 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 3639933 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 4094934 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 4567878 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 4693114 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 4710399 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile