RNA id: AMCG00016467


Basic Information

Item Value
RNA id AMCG00016467
length 2090
RNA type mRNA
GC content 0.50
exon number 16
gene id AMCG00016467
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20408303 ~ 20419818 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTGCCACTCGAGGCATTACGGTACGTACGTCGTGGGTTACGTACGTCCACCCGGAAGTGTCTTGCCAGCGTTGCCTGTCAACTTGAAGTGTGTAGAGGTTGTGTAGGTAATAATTACCTAAAGATGCTGTCTCTGAGATTACGGTTGCTGAGCGCTGCCTCCTCCCTGACAACCAGGGCTCTGTCATCAGGGCCTTCAGCTTCCCAGGGCAAGTCTCCTGACATGAAAGAAgGACATTCACACTTGCTTCTGACTGATGTCAGGAATAGACTGAGAGAGATAGTGGGAGCTTCAACGAACTGGAGTGACCACAGGAAGGCAATGCAGGAGCGGGCGTCTCTGAGCTCCCAGCTGGCCAGCAGTCAGGAGGACCTGCCTGTGCGGACCATGAAGGACAGCCTGATCGAAGTGCTGCTGCCGCTGGGGAGCCAACCCACGCTGCGTGAGAAATACCTCACCATGCACAACAGCGTCAGGTTTGGCCGAATCCTTGAAGATCTTGATAGTTTAGCAGttcTTATTTGTTACACCCACACCAAAACGGACACTCTTGGGAGATCTCCGCTGTCTATAGTCACCGCCTTGGTGGATAAAATTGacaTGAGGAAGAACATTATTTACCCAGACTGCGACATCAAGTTTACAGGGCATGTGACCTGGGTGGGCAAAACCTCGATAGAAGCCAAGATGCATGTGACCCAGCTCCATGATGGTGCCTTTAGTCCAGTCTTAGACGCCACATTCGTGATGGTGGCCCGGGACCCGGAGAATAAGCGGGCTGCCTTTGTCAACCCACTGAAGCCTGAGGGACCAGAGGAGGAGCGTCTCTTTCAGCAAGGAGAAATAAACAAGACCAGGAGGGTGGAGCTGAGCACGGCCTCGCTGCTGAAGGTGGCCCCCACGGCCGAGGAGAGGAAGATTGTGCACAGCCAGTTCCTCAGCACGCTGGACTCCAAGACGGTCAGTTTCCGCAGCCGAGTGCTACCTCCCAACtcggtgtggatggaggacgcCAAGCTGAAGGGGCTGGAGATCTGTCACCCACAGGAGCGCAACATTTTCAACAGGATATTCGGAGGTGGGTCTAGGCCATACCTGGTTGCAGTGGATGACATCCTGTTCCAGAAGCCAGTGGAGGTGGGATCCTTACTGCTGCTCTCCTCACAGGTGTGCTACACAGAGGAAACGTACATCCAGGTCAGAGTTCACACAGAGGTGTTTGACGCTATGACCCGGCAGCACAACACCACCAATGTATTCCACTTCACGTTCTGCTCCCAGGAGGAGGTCCCACAAGTTGTCCCCAAAAGCTACGGAGAATCCATGCTGTATTTGGATGGGAAGAGGCACTTTGATCTGACCATGAAGGGAGGCACAGTAgcctgagggagggagagctgACAGAAGAGCAACACACCAAAGCCTTTACTCTGCCCATCGCCCTGCTACCCTGCCTGTGGGGGCAGAAGGGCTTCCATTTTCAGCCAATGTTTCAGAATCTATGTTATGCTTGATAGCTCTGCTGCCCTGCCAGTGGTGAAGGGCCATATTCACATGAGCTTTGAGGAGGGGATTAGTGGAGATACTGCAGACTCCATGCTGGGATTCACTGACACTACCTTTACAACAGGAAAACACGGGTCCTTATTATACTGGATTATGTACTTTCTCTGTCCATGAATGGGGAAGGGCAAAGCCCTCTATTTCACCATGGTGTCACCAAGGGGCAAGCCAGGCTTGAAGATCTTCAGGCACCGGTTTGTGATTTCAGGTTTAAATgaccaaacaaaacacacatgggtaaattaaaaaaaaaaaaaaaacacagccacAACACTGCCCCTTGAAATTCCAAGACTGTACACTCCAAGCACTTACCATATAGTCACACTCTTTATATTGctcaaaatattatataatagtaCTTATGAACACCATCCACATTTGCCTTTTGGATTATGATGGCTGAATCTTTCATGTTAtcaattgtatttcaaaaactgACTAAATAAATCAAGTTGTATCCGCTGGGAGATAAGTCTAAAGTCACATTCTTACAAGTCACAGTAACAAATGTCATTATATAAT

Function

GO: NA

KEGG:

id description
K17361 ACOT9; acyl-coenzyme A thioesterase 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16951 lncRNA upstream 4797 20393511 ~ 20403506 (+) True G13685
TU16943 lncRNA upstream 63231 20343424 ~ 20345072 (+) False G13682
TU16941 lncRNA upstream 64218 20342074 ~ 20344085 (+) True G13682
TU16940 lncRNA upstream 88964 20319017 ~ 20319339 (+) True G13681
TU16917 lncRNA upstream 118469 20287075 ~ 20289834 (+) True G13662
TU16972 lncRNA downstream 4319 20424137 ~ 20425842 (+) True G13700
TU17090 lncRNA downstream 194927 20614745 ~ 20617697 (+) True G13791
TU17100 lncRNA downstream 227017 20646835 ~ 20652272 (+) True G13798
TU17101 lncRNA downstream 233852 20653670 ~ 20655615 (+) True G13799
TU17170 lncRNA downstream 1375444 21795262 ~ 21832148 (+) False AMCG00016490
AMCG00016469 mRNA upstream 15814 20380613 ~ 20392489 (+) True AMCG00016469
AMCG00016456 mRNA upstream 54797 20350648 ~ 20353506 (+) True AMCG00016456
AMCG00016458 mRNA upstream 76528 20328705 ~ 20331775 (+) True AMCG00016458
AMCG00016457 mRNA upstream 91549 20308979 ~ 20316754 (+) True AMCG00016457
AMCG00016448 mRNA upstream 282019 20104916 ~ 20126284 (+) True AMCG00016448
AMCG00016466 mRNA downstream 6675 20426493 ~ 20434211 (+) True AMCG00016466
AMCG00016465 mRNA downstream 15949 20435767 ~ 20440084 (+) True AMCG00016465
AMCG00016468 mRNA downstream 28532 20448350 ~ 20466290 (+) True AMCG00016468
AMCG00016475 mRNA downstream 58237 20478055 ~ 20482996 (+) True AMCG00016475
AMCG00016474 mRNA downstream 79480 20499298 ~ 20502189 (+) True AMCG00016474
TU16114 other upstream 3286371 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 3922300 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 3922300 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 3923155 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 5969697 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 3660199 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 4115200 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 4588144 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 4713380 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 4730665 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile