RNA id: AMCG00016469


Basic Information

Item Value
RNA id AMCG00016469
length 2263
RNA type mRNA
GC content 0.47
exon number 9
gene id AMCG00016469
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20380613 ~ 20392489 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGTCCTCTTCGGGACACCGTACCTAACAGCTCAAGGCACCTCCAAGAAGGACTATGCACAAGGTGGTGTGGCTGGTGGCCGTGCCTGGGGGTCTGGGCCTGGCAGCAGGGAGAGTGGTGTATGCTGCCAGCGAGGAGAAGCAGGACAGCGTCCCCCTGAGGACTGAAGAGctgtCTCTGTACACGACCCCACAAGACAAGTACAAGTACTTAGAGCCTGAGGCTAGTCAGCTGGAGCAGGGCATCTCAGTGCTGAGGAAATCTGCAGAGCCCTACACCACCTGGTGTCAGGTACAGTATGGGGGACTAAGCAAACTGGCCAAACAACAGTGGAGAAAGCACAGGTATTATAAACCAATGCATAACGAAGCTTACATGGCAGCTAAGCCAAGATTTGAAGGCTCTGTCCAGTTTGGAAAAGAAGGCTACGAGTTCCTGAGAGATCCCCCCCCCGGGTTTTACCCACGCGTCGGAGTCATTGGCTTTGCCGGAATTCTAGGACTCTTTCTGGCAAGAGGTTCCAAGATCAAGAAGCTGGTCTATCCGACTGGCTTAATGGCACTTGGGGCTTCCCTATATTATCCTCAACAAGCTGTTACAGTCACAAAGGTGACAGGTGACACTCTGTACGACTGGAGTCTGTGGGGCTACTtggctgtggagtctctctgGAAGGACAAGAGCGCTGGGAAGCAGCCCAGTGTGAAGGCCCAGTGAGGACTGACAGGGCAGCAGTGCAGGCACTTGGGACTGCTGGGGCACCAGGTACACTgagtccccccccaccacacacacctgGCATcgctgcgctctctctctcaggatctCCGTCTTGCACTAGCCCATCCCAGAGTATGCAGATGGTTCTCACTTACCATTTTTAACTTGGAATGCTACTGATTGGATTCTGccttcccccccacctcttCTTGTAActactgtatttatgtaaagtATTAAACAGCTCTCTGCCAAGGTAATTATTTTCCTGGATGCATTGTTCCTGGGAAGTTTTACATTCTGACGTCTAGGTCACTCCACGTGAACTTAACTCTCTCTGCTCCTAAAATAGTCCAGCTGTGGCCTAGAGtggccttggataaaggcatcaggTAAATGTCTTATAAGTTGTCCTTCACAATCACTGTCAAGGTGTTGGATTCTGGGCAGGGGGTTGTGCCCACCAGCCTACTGTCTGTCATAGTTGCTAGAGTAACCCCTGTATTCAGACCTAGAGGCATCTTAGCCATAAGGGCATTTCTATCAGATATCTGTAGTAAAATGTAGTGATATAGAACTGTCTTCTGAACATGGCTACATAAAGGATAAAATGCCCTCTCTTGAATGCACACTCTTGAAGTTGAGGGCACGATTTCTAAATATAACTGAATGGTGTTTTCAAAAGGATGTGGTGCAGCTCGTTTGAACAGAAggaatattgtattatgttctCAGCTCTGCTTATCGTTCCTTTTTCCTGCCTTTCACCAAAGCGAGTGATTTTTAAGAAGATCAGGAACAGCATGACGCACAGGCAGCAGCTGCACTGTAGGCGCAAGAGTCTGAGTGAGTGTAGGACAGGGAGAGGGGATTATTGCTGGACAGGTCTTCTGCCAGTTCACCAGATGGTCAGTAAGCACTTTATTCCATCTGCACACCATCCGCCTAGAAAACAGGGTGATTCCTCTGACTTTTATAGCACCaaatatacacactcacattaATGCCACCGATCTGAAATCAAACAACATATCTTGCACCAAGTGTCACATTATCATCCTTTGTGCTTTTACTTATCAGAGCACACTGACAAAGCAAGTGGTTTTGAAACTGGTACAGTAGGTTGACCAGTTCTCCAGAAGCTCCTTTGGGGGAAGACTGGATAAACCTTATGCCTGTTATATACCCGCCCCCTTAAATTACAAATTGAGTTGCATCTGCCTGTTATTGCAGAATCAACCATCTTTAAACGGCAACTTTCTTAACTGTAGAGCACATAATTCAATTGGAAAATAATCGGGATTGTCAGCAGGTTATTGAGCAAACTGAACGATAAATTGTGGCCAGATCTCacttgtaaatgttttctttgcatccaaaacaaaccagaacaaatacattcttTAACATGCAGTATCACAAGAGGATTTTACTCTTGTAATATGCCATAGTAACCAGATTAGATGCACTTTTAGGGCTGCGCCTGTGAAAGATTTTTATCGATATACCGTTGGAACAATTCACCGCGGTGATACTGTGGGG

Function

GO: NA

KEGG:

id description
K24625 APOO; MICOS complex subunit MIC26

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16943 lncRNA upstream 35541 20343424 ~ 20345072 (+) False G13682
TU16941 lncRNA upstream 36528 20342074 ~ 20344085 (+) True G13682
TU16940 lncRNA upstream 61274 20319017 ~ 20319339 (+) True G13681
TU16917 lncRNA upstream 90779 20287075 ~ 20289834 (+) True G13662
TU16913 lncRNA upstream 124593 20219443 ~ 20256020 (+) True G13659
TU16951 lncRNA downstream 1022 20393511 ~ 20403506 (+) True G13685
TU16972 lncRNA downstream 31648 20424137 ~ 20425842 (+) True G13700
TU17090 lncRNA downstream 222256 20614745 ~ 20617697 (+) True G13791
TU17100 lncRNA downstream 254346 20646835 ~ 20652272 (+) True G13798
TU17101 lncRNA downstream 261181 20653670 ~ 20655615 (+) True G13799
AMCG00016456 mRNA upstream 27107 20350648 ~ 20353506 (+) True AMCG00016456
AMCG00016458 mRNA upstream 48838 20328705 ~ 20331775 (+) True AMCG00016458
AMCG00016457 mRNA upstream 63859 20308979 ~ 20316754 (+) True AMCG00016457
AMCG00016448 mRNA upstream 254329 20104916 ~ 20126284 (+) True AMCG00016448
AMCG00016449 mRNA upstream 315991 20059343 ~ 20064622 (+) True AMCG00016449
AMCG00016467 mRNA downstream 15814 20408303 ~ 20419818 (+) True AMCG00016467
AMCG00016466 mRNA downstream 34004 20426493 ~ 20434211 (+) True AMCG00016466
AMCG00016465 mRNA downstream 43278 20435767 ~ 20440084 (+) True AMCG00016465
AMCG00016468 mRNA downstream 55861 20448350 ~ 20466290 (+) True AMCG00016468
AMCG00016475 mRNA downstream 85566 20478055 ~ 20482996 (+) True AMCG00016475
TU16114 other upstream 3258681 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 3894610 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 3894610 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 3895465 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 5942007 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 3687528 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 4142529 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 4615473 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 4740709 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 4757994 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile