RNA id: AMCG00016471


Basic Information

Item Value
RNA id AMCG00016471
length 2523
RNA type mRNA
GC content 0.64
exon number 15
gene id AMCG00016471
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20441545 ~ 20447031 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGTTCGTCAGAGTGAACCGCTCCTACCAGCCGCACGGCCTGGGAAAGAGGACGGGGAGGGCCAGGAAAAAGACATCGGCGAGACAGGAATGGGTGAGCACCGTGCATGACCTCAGCGTGCATCGGGCGACTCCTGAAGAACTGAACCGGCGCCATGAGATGCACAGGTCCAAGAACAGAGCGGCGGCGCAATGGGAGCTCAGGGAGCGGGCCCTCAGGAGGAAACTGAGGAGGCAGGGCCCGGCTAGCCCAGACCCGCTGGACAGAGCCAAACTGGCCATCATGAGGGAGGTGCTGGCGGACCAGTATCAGATGCAGGAGGTGCTGGAGAGGTCCGACCGGGCCATGGCTGTGGTGAAGGATTTATTTGGTGATGCACCCCGCAGAAAAACAGGCTTCCCCAATGTGACTGTGgcccctgactgtgacctgGAGACCTCAGTGCTGCCGGTACTGCAGAGGCCAGAGCCACCCACACAGCTGTCCATCCTCAGCCAGTCGGTATTGAACTCCCAGgCTCTGAATGAGCTGGGAGAAGACAGCCTGAGCGACGGCGAGCCGGAGGACAGCAAGGAGGCCAGGAGCCCATCTGTGTCTGCCATCTCCAACATGGACATGGGCAGGTATAGCCAGTATCTGCAGGAGGAAGATCCACCAACCCAGGACAGGAGGCCTGCAGATAAGCAGCAAAGCCGATTACACCCCTCCACAGCGCCTGACACTGCCGTGACTCCTCGCACCCCCCACAACGCAGCCCTGTCCTCGGGGGTGCAGGCAGtcagtgtgaccCTTGTCTCGGTGTGCTCTTCCCTGCCCTGTACAGCAGCACTGAATGCCACAGCCAAGGTACGGAGAGTGAGGCCCCAGCGGCAGGGCACAGAGCAGAGCCCAGCCTCCCCATCACGCCTCTCCACCCTTGTCACCCACGTCCTCAACCCGGACGCGCCAAGGCCCAGGACAGgGAGGAAGAGCCAGTCCTCGCGTTCCCTTAGGAGGCGCTGTGAGCAGCCGCCCGTCCTGGACAGCTCGGCCCTCACCTCTCTGAGTGGGAACCAGTCTAGCCTGGAGCTGCTGCAAGACATGCTGGGAGAAGTGGAGCAGGAGCTGGACTCCCTAGATCTCCACGGATCCCAAGAGCTGCCCCCCACCGCAGAGCGCCCACACCGAGCACCGGGACTTACCGGCTTCTCTGTGTCCCTGGTGTCCACCCTCCGCAGGCTGGCCCAGCACCTCAGACAGAGCGAGGGCGTGCTGCAGCAAGAAACTGTCGAGAGGAGGCGACTGGAGGATGAGACACAGGAGCAGCGCAGACTGATCGACGCCCTGACCGCCGAGATGCTCGCCCTGCGGGAGGAGAGTGCAGCCAtgcagGcccagctgcagcagcacacGGCCATGACCGAGCACCAGCTGAGCTCCCTGAGGCAGGAGCTGAGAGCCCTGGGGGGCAAGAGTGACGTTGCAGAGCCGCAGCCTAACCCTGCCCCCACTGGCGCACCCCTAGCTGCGGGGAGTGCTGCTTCAGACGGGGTGTTGCTTGTGGAGACGATGCCCTGTCCTGACCGAGAGAGTGTGGAGCAGCAACCCCCCAGCAGGGCCCTGCCCCCGCACCTGTTCCACTCCGCCGTGCTGCTGTCCCCCCCCCGCCAGAGAGACAGCCAGCCCCCCCGCACAGCACCCTCAGTTGTGAGGAACGTCTTTGTGGAAAGTCAGGATCCAAACCACAGGGAACAGGGTGTTGACAGGGAGCGGTCGGGGCCGGGCTGGGAGGCGGCCTGCCAGTCCACCCAGGATGAGCTGGAGGAGCTTAGTGTGGCCTCGTCCTTTGCCAGCCTCCCCCGCTCGGGCCTACTGCCCACAGCTGGCTTCCGTGTGGCTGAGCCGCCCACCACCATGTGGAAGCAGGGGACAGAGGCGGCAGCCAGCAGGAAACAAGAGCGCCCCCAGCTCTCGCAGACACAGGACTCGCTGCTCAGCCACATCGCGGAGCTCAGCCTGCAGAACTCCCTCATCAGGGCACAGCTGGGGCAGATTCGAGCCCAGCCAGGGGAGGCTGTGGTGACCCAGGAGCACAGGAGTCCAGTAACGGGGCCAACTGCCACAGCGAAAGGAGTGCCTTCCTCTGGGACAGAGCAGCAGGTGGCGCTCCCTCTGCCCTCCCTGTCCAGCGTGGAGCAGCGCATCGCCGAGCTGAACCGGCAGAGCGCAGAGGCGCGTGGCAGACTGCTGGAGCTGATTGAGCAGCAGCGGCAGGTGTCCTCTGTCTCCCCCAGCATCTCCCCCATCCCGACTCACGAACCCCACAAAGCAGGTAATGGAGGAAGGATGCTAGAGGTGTCCATCCCACAGCCTGACATGGACTCCTCCACTGGGACGACCCCTTCCTCTGTGGGCCGTAGCTGTGGGAGAAGGTCTGCAGGCTCTGGGACTGGCAGCAGGACTGGTTCCCCTCTGAGCACCAGTATGGGAGAGGGCAGGACAGTGTCTAGCCAGCACAGGGCACAGGTGAGCAGGAGTTAG

Function

GO: NA

KEGG:

id description
K16490 SPICE1; spindle and centriole-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16939 lncRNA downstream 124966 20315742 ~ 20316579 (-) True G13680
TU16865 lncRNA downstream 436605 20003149 ~ 20004940 (-) True G13615
TU16616 lncRNA downstream 1182988 19258323 ~ 19258557 (-) True G13414
TU16615 lncRNA downstream 1184626 19256638 ~ 19256919 (-) True G13413
TU16588 lncRNA downstream 1188131 19165586 ~ 19253414 (-) True G13392
TU17050 lncRNA upstream 21215 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA upstream 39850 20486881 ~ 20492021 (-) True G13766
TU17088 lncRNA upstream 148298 20595329 ~ 20598765 (-) True G13789
TU17099 lncRNA upstream 183441 20630472 ~ 20636938 (-) False AMCG00016479
TU17108 lncRNA upstream 199805 20646836 ~ 20652268 (-) True G13806
AMCG00016470 mRNA downstream 15795 20421954 ~ 20425750 (-) True AMCG00016470
AMCG00016472 mRNA downstream 35769 20401388 ~ 20405776 (-) True AMCG00016472
AMCG00016473 mRNA downstream 42796 20393597 ~ 20398749 (-) True AMCG00016473
AMCG00016460 mRNA downstream 62413 20372554 ~ 20379132 (-) True AMCG00016460
AMCG00016464 mRNA downstream 79335 20357233 ~ 20362210 (-) True AMCG00016464
AMCG00016477 mRNA upstream 59817 20506848 ~ 20510468 (-) True AMCG00016477
AMCG00016476 mRNA upstream 70768 20517799 ~ 20523757 (-) True AMCG00016476
AMCG00016479 mRNA upstream 169478 20616509 ~ 20636960 (-) True AMCG00016479
AMCG00016480 mRNA upstream 219719 20666750 ~ 20683024 (-) True AMCG00016480
AMCG00016481 mRNA upstream 476949 20923980 ~ 20973210 (-) True AMCG00016481
TU16905 other downstream 305998 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 1336164 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3580366 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 3008061 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3252118 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 3864006 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 3864006 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 4434117 24881148 ~ 24882098 (-) True G14305

Expression Profile