RNA id: AMCG00016474


Basic Information

Item Value
RNA id AMCG00016474
length 1077
RNA type mRNA
GC content 0.60
exon number 6
gene id AMCG00016474
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20499298 ~ 20502189 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCTTGTGCCCTACTTTCTGTAATCTCTCTCGCAAGGTCAAGTTTTTGATTGTGCTGCTGCTCTGTGTGACTCTGCTGACCTGGATCACCACTCTAAACAACTTCAGCGACATTGTCCGCGATGCGCATGAATTGCCGAAACTCCGGGATAGGCAACAGGAGGCACATGATGTCATCAAGGGGGGAATCGGGACCTCTGAGGGGGCCAGGCCAAAGGCAATCCAGCTGGCTCCCTTCTCTCCATCCCCGACCCCTCTGCAGCCCTGTCCACAACAATCCCCACTGCTCCGGGGAGCATTGGCGCTGTCGTTCAAACCCTCTCTGACGCTGGCCGAGGTGGAGCAGGAGAACAGGCAGGTGTCGGAGGGGCAGTACCGGCCGCTGGGCTGCGAGGCTCGGCAGAGCGTGGCCGTCCTCATCCCCCACCGCAACCGCGAGAAGCACCTGCTCTACCTGCTGCACCACCTGCACCCCTTCCTGCAGAGGCAGCAGCTCCACTACGCCATCTACGTCATCCACCAGGCGGGGAATGTGACCTTTAACCGAGCCAAGCTGCTGAATGTGGGTTACCTGGAGGCCCTGAAGGACTATGACTGGCAGTGCTTCATCTTCCATGATGTGGACCTGGTCCCGGAGAATGACCGCAACCTGTACCGGTGTGACAGCCAGCCCAGGCACCTGGTGGTGGGGAGGAATGCCACAGGGTACAGGTTGCGCTACAAAGGCTATTTTGGAGGGGTGACGGCCATGAGCAAGGAACAGTTCTTCAGAGTGAACGGTTTCTCGAACACGTACTGGGGCTGGGGAGGCGAGGACGACGACCTGCGCATCCGGGTTGAGCTGCAGAAGTTTAAGATTGTGCGACCGCCTCCTGAAGTGGCGCGCTACACCATGATCTTCCACACCAGGGACAACGGCAACGAAGTGAACAAAGACCGCATGCGTCTGCTGAGCCGTACGCCACGCGTCTGGAAGAGGGACGGCCTGAGCTCCTGCCTGTACAAGACGCTGACAGTGGAGAGGCCAGCCCTGTACATCAACATCACCGTGGACCTCGGCCGCCCGCAGCACTAG

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K07969 B4GALT4; beta-1,4-galactosyltransferase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16972 lncRNA upstream 73456 20424137 ~ 20425842 (+) True G13700
TU16951 lncRNA upstream 95792 20393511 ~ 20403506 (+) True G13685
TU16943 lncRNA upstream 154226 20343424 ~ 20345072 (+) False G13682
TU16941 lncRNA upstream 155213 20342074 ~ 20344085 (+) True G13682
TU16940 lncRNA upstream 179959 20319017 ~ 20319339 (+) True G13681
TU17090 lncRNA downstream 112556 20614745 ~ 20617697 (+) True G13791
TU17100 lncRNA downstream 144646 20646835 ~ 20652272 (+) True G13798
TU17101 lncRNA downstream 151481 20653670 ~ 20655615 (+) True G13799
TU17170 lncRNA downstream 1293073 21795262 ~ 21832148 (+) False AMCG00016490
TU17191 lncRNA downstream 1419964 21922153 ~ 21922461 (+) True G13873
AMCG00016475 mRNA upstream 16302 20478055 ~ 20482996 (+) True AMCG00016475
AMCG00016468 mRNA upstream 33008 20448350 ~ 20466290 (+) True AMCG00016468
AMCG00016465 mRNA upstream 59214 20435767 ~ 20440084 (+) True AMCG00016465
AMCG00016466 mRNA upstream 65087 20426493 ~ 20434211 (+) True AMCG00016466
AMCG00016467 mRNA upstream 79480 20408303 ~ 20419818 (+) True AMCG00016467
AMCG00016478 mRNA downstream 79757 20581946 ~ 20594925 (+) True AMCG00016478
AMCG00016482 mRNA downstream 370204 20872393 ~ 20876476 (+) True AMCG00016482
AMCG00016490 mRNA downstream 1279917 21782106 ~ 21804502 (+) True AMCG00016490
AMCG00016489 mRNA downstream 1359599 21861788 ~ 21904114 (+) True AMCG00016489
AMCG00016493 mRNA downstream 1403193 21905382 ~ 21906361 (+) True AMCG00016493
TU16114 other upstream 3377366 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 4013295 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 4013295 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 4014150 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 6060692 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 3577828 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 4032829 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 4505773 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 4631009 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 4648294 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile