RNA id: AMCG00016476


Basic Information

Item Value
RNA id AMCG00016476
length 2643
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00016476
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20517799 ~ 20523757 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGAGAAGAAGGAACATTCTCACCACGCTGTTCATAGTGCTGCCCTGGACCATCCTGCTCAGCATCTGGCACCAGAACCCGGCCACTCGCTACCTCACCATCCTGCGCAAAGAGACATATGAGAACCGCAGCGCCAGGAGCCTCCAGCCGCTCGTCAACTCCACCCAGCCCCGAGAGGAGCATGCCCCGTGCGTCCACCAGCAGACAACCATCCCCCCACAGCCGCCGCCGCCCAGATATGTGTACTCCCGCCCACCTGGCTGGTCCCGGCTGCTGCCCACCATCTACATCATAACGCCCACCTACACGAGGCCAGTGCAGAAGGCAGAACTGACCCGGCTGGCCAACACCTTCCTGCACGTCCAGAACCTCTACTGGATCGTGGTGGAGGACTCGCCCCGGAGGACCAACCTGGTGGCCCTGGTGCTGGAGAGGAGCGGTCTGAACTTCACCCACATCCACGTGGAGAGCCCCAAGAGCGTCAGGATCGGCCTGGCCAAGTCATCCACCCACACGCCCCGGGGGACCCTGCAGAGGAACCTGGGGCTGCGCTGGCTGAGGGACAACCTAGTGCTCAACGACTCCCTGCAAGGGGTGGTGTACTTCGCCGACGACGACAACACCTACAGCCTGGAGCTGTTCGAAGAGATGAGGTACACACAGAAGGTGTCTGTCTGGCCTGTGGCTTTCGTGGGGGGGCTGAGATACGAGGCCCCAAAAGTCAGCGGCGGGAAGGTGGTGGGCTGGAAAACCGTGTTCGACCCCAACCGTCCCTTTGCCATCGACATGGCCGGATTCGCCATCAACATCCGATTAGTGCTCATGAGGCCTCAGGCCAACTTCCAGCTGAACGGAGTCAAGGGTGGCTACCAGGAGACCAGTCTGCTGAAGGACCTGGTGACCATGGCCGAACTGGAACCCAAAGCTGCCAACTGCACCAAGGTACTGGTCTGGCACACCAGGACAGAAAAGCCCACGCTGGTGAAcgaaggcagacaggggtttacAGATGTGAAGGTGGAGGTGTAAAGCATGGAGACGTCAGCCTGTCGTATTTGTGATGGATGCCAGCCGTGGGGATGTGCTCAGTTTTGGGTGCCGCACCAGACACGGAGAGCGCTGCACCTCACCTCTGCCCAGCCGGGGCAGTGCCACAGgagcagaggtcagaggtcagagccAGACTTCACTGAGCTGTGCGCTTCCCTGCAGCTGAGAGATTCGCAGCGCCACGCAAGACTGAGCACACCGAACCatgggggagaggaggaggacgagaACCGTAAGCCAAGCCGAGAAAGCAGCACTTCAGAGCTCGCAGAGAAAAAAGGGAACGGAAACTAAGAACTCTTTATCCGACTGAATGTAAAATCTCAGAGCACGTCAGTACTGTTCAACGGGTTCCCATGCATCTCTGCTTGCTCTGCGTGTTGCCCGTAACAGGAACTAAACACTAAACCCAATCTCTTGTTCTCCTGACAACGTTTTTCCCTcggtacattaaaaaaacacactcacgTTATTTGTAATCTGTTTTGCATCAGCCGTTTTTGCAGCCTGCAATAAATCTTGTTTGAACCTGGGGAACACGTTTGAGGACAAACCTTCCCCGCTCGCCTTGCATTGCCGATACAGCAGGAACGCGGGTGTTTAGGCTGCAGAAGCGATGCCTGAGTCAGCATTTCTCCACCGTGTCGTTCTCTGGAGCCAGATGACATCATCGCATTAATTAGTACCAAATGATAAAGGGGCTACGAAGCTGATTGCTAAGAGGACATGAGACTGCGTTTCTAAAGCTTGGCTTATTAATCTTATCACTATATATGGaccttatttaaaaacaatatttaaaagacaTCAAATAGACAACGCATAGTCACTTGGGCTCTCCAGCATATGGGGGGGGGCTCACAGCAGTTCACTCtgagttattttttgtttgtttgtttgttttttaaaaacacaacaagacCTCTCGTAGTGTCTTCGTGTAAGTTTACATGagatttagttttaaaacagaAGTCTTCCAAATACTTCCAGATGTCACATTTGAGGGGGATGTAAATAATGCCTgtgagatttaaaatatttccatttgtcACAGATCCTCTTCCCTCCTGTGTTTGATTAAGCTTTATTGGAGAGCTTTCTCATCACTGAATTGATGTCACAGTTTGTCACAGTTCTCTGTAAAGAGTTCTGCAAAGTTATGTCCAGTGTTCATCTCattggaatataaaaatgtaaaaatcgaTACATTCCAcatcagtttaatttgatttggttttcttgtttgtgtgtttatagtcTCTCAGAGTAACTCATAATCAACAGCAGAGTATCAGACCGAGGATTGTGAGCACAAAGCCCGAACACCACAAACAGCTCCCTATGAACACCACACGATAAAGGCCTGTTAGCAGGAGTTAATAAAGAGACTCCTTAGAAATCCAAGGTCAGGAAAGCACAACGGAAACcgaaaacatgcaaaaaatacaaaaaacaaaagaaaaacattgctcTAAAGAAGcttttgtatttacttacacagttaaaattaaattaatctatatAGGTGTTGTAAATGGACTGAGAAAATACAACTGTGGAGCAAAACTACAaacacatactatatat

Function

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K20869 IRX9; putative beta-1,4-xylosyltransferase IRX9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17050 lncRNA downstream 4395 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA downstream 25778 20486881 ~ 20492021 (-) True G13766
TU16939 lncRNA downstream 201220 20315742 ~ 20316579 (-) True G13680
TU16865 lncRNA downstream 512859 20003149 ~ 20004940 (-) True G13615
TU16616 lncRNA downstream 1259242 19258323 ~ 19258557 (-) True G13414
TU17088 lncRNA upstream 71572 20595329 ~ 20598765 (-) True G13789
TU17099 lncRNA upstream 106715 20630472 ~ 20636938 (-) False AMCG00016479
TU17108 lncRNA upstream 123079 20646836 ~ 20652268 (-) True G13806
TU17110 lncRNA upstream 142385 20666142 ~ 20666980 (-) False AMCG00016480
TU17114 lncRNA upstream 237666 20761423 ~ 20761693 (-) True G13812
AMCG00016477 mRNA downstream 7331 20506848 ~ 20510468 (-) True AMCG00016477
AMCG00016471 mRNA downstream 70768 20441545 ~ 20447031 (-) True AMCG00016471
AMCG00016470 mRNA downstream 92049 20421954 ~ 20425750 (-) True AMCG00016470
AMCG00016472 mRNA downstream 112023 20401388 ~ 20405776 (-) True AMCG00016472
AMCG00016473 mRNA downstream 119050 20393597 ~ 20398749 (-) True AMCG00016473
AMCG00016479 mRNA upstream 92752 20616509 ~ 20636960 (-) True AMCG00016479
AMCG00016480 mRNA upstream 142993 20666750 ~ 20683024 (-) True AMCG00016480
AMCG00016481 mRNA upstream 400223 20923980 ~ 20973210 (-) True AMCG00016481
AMCG00016483 mRNA upstream 463235 20986992 ~ 21012361 (-) True AMCG00016483
AMCG00016484 mRNA upstream 550337 21074094 ~ 21245418 (-) True AMCG00016484
TU16905 other downstream 382252 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 1412418 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3656620 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 2931335 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3175392 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 3787280 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 3787280 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 4357391 24881148 ~ 24882098 (-) True G14305

Expression Profile