RNA id: AMCG00016478


Basic Information

Item Value
RNA id AMCG00016478
length 4188
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00016478
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20581946 ~ 20594925 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCTTTTCGAAGCACTGCCCCCTCACAAGACCGTTTAAATGGGAGATGGGCATCATCAAAGTTATTTCCGAGTTTGGCACAGACCCATGCCCAGACCTGACGAGGGAGGTGTATCTGCAGGATATTCACTGCGTGGGGTCCCTCTGCAAGCTCTACTTCAGAGAGCTGCCAAACCCGCTGCTCACCTACGACCTTTACAAGAAATTCACGGATGCAGTGTCGGCCAAGAATGAGCATGAACAGTTGCAGCGAATTCAGGATGTCATCAAGGAGCTTCCTGCTTCTCACTACAGGACCCTGGAATATCTCACCAAGCACCTCAGACATCTGGCCTCTTACAGCACCGAGACCAACATGCATGCAAGGAACCTGGCCTTGGTGTGGGCTCCCAACTTGCTCCGGTCCAAGGAGATCGAGGTGTCCAAGTGCAATGGGGACGCGGCCTTCATGGAAGTGCGGGTCCAGCAGACGGTGGTGGAGTTCATCTTGAACCACATGGAGCAGATCTTCAGCATCAGTGGCtgcaccagcagcagcagtcctCCTAAAGTAGAGAATGATGAGCGCAGCCTGGAGGGTGGGTGCCCAGCTCTCCTGGTCAGCAGCCAGTGTGCGCCCATGAAGCTGGTGAGCCTGGAGGAGGCGCAGGCACGCTCGCTCAGCCCCAACCACCCGGCACGCCGAGagcgacagagagagaacagccTGCCAGATGCCAGCACTACCACCCTGTACCACACCGTTATCGACCTCCCCGACAGCAAaagaaagttctcaGGAAAATCCAAGAAGTGGAAGTCCATATTTAACCTGGGGAGGACCATGACTGAGACAAAGGGTAAACTGAGCCGGAATGGCAGCGTGTTTGTGAGAGGCCAGAAACTCTCGGACGACGACAAGGACAGCGAGTTCAAGCGGCCTGCTGGGACTGGCGGATTCATCATGCCAGCATTCAAGTCGCGCACCCTGGGCTCCGGCAGCACCTTCGACCTGAGCAAGAGGGATCATGAGTGGGACTATGAGCTGGAGCGGTCATCTGGTGCCATGGGAGGAGGATCGCCGGGAAGTCATGGTCAGAGCGAGGCTAGAGTGGGATCGAGGAGCTCGACGCCACAGCAGAAACAGCTGCCGGAGCAGCTGAAGGTGTTCAAAGGTGACGACCTGGGCCGCTGTGAGCCCACCTCCCCCAAGACTAGGAGGATGTTCTACTCCACAAGTGCCAGTGATGGCAGCACCAAGCCCACCTTCCCTGGCAGCCTCTTCCCACTGGAATCCTCACCGCGACACCAGCGCAAGGCTCTCAACATCTCTGAGCCCTTCGCAGTGTCCGTGCCTCTGCGTGTGTCGGCTGTCATCAGCTCCAACAGTACCCCCTGCAGAGCACCAGGCAAGGACAAGCAGGACAAGCAGAGTCTGCCCTCTGTCAGCGAGGTGGCCTTACTCAGGTCCGGTAACGAGGGCACGCTGTCAGAGCAGGGCCGCAgtgggagcagcagcagcggctgCAGCAGCGCCAGCAGCAACAGCTCAGTTTCCCTAAAGAAGGACGAGAAGTCAGTGATGGTCACAAACAGTGGGGAAGAGGTCAACACCAGTATGGATGTAGCAGAAGGACATAATCCAGAGCCGAGGGAAGGCCGCACACGAGAAGATATAGAGAAATCACCCCCCGTCAGAGTTCAGCAGCCTCCTTCTCTACCCACACTGCACCCTGTCTCACCCGTCCTAAGCACAGACTCAGCCGTTAGAGGGGAACCTCTGCCCATGGCAAAACCTAGTGGTCTGCTGGTGACGGATCTGGTCAAACCCGAGACCCAACTGGACAACCTAATGAAGCAAAATCAGAAGCTCAGCAGGTTGAGCGAACTGGATGAGGAATCAACGACTAATGCTGCGATGGATGAGCTGTGGCCTGACATTCATCTCGAGCTAAAAATAGTTGAGCCTGATGTTGATATTATTGATGATAAATTTGAGTCAGTCCCACTCTTCACTCACAACACCAAGGATGAAGTACAGCAAAAGCCAGACCCACATGCGAAACGACGCAGCAGTTTCCCCACCTATCCTTTGTTAAGCTGTGGACAGGTTTCACTAGCAGAAAAAGCACTCAAGACAGACCCCCATAATGGCAGTGCCAGTTTTGGGGGCATTTCAGACAGAAGACTTTCATTTGATACCAGTTTCAATCCAAAGGCAGATGTCAGGAAACAAAAAGCGGGCACTGAATATAAAGTTTCCACAAAACCTATGGATGGCACAGGAAATGAACTACCTGTACAGCCCAAGGATACAGAGAAAATACTCTGTCCTTCTACTGAGTTGCCCCCAGCTGTAATATGTGGAGCCTCAGCTACAAGGAGGAGGGGTTCAGAGCCTGGTCCAGAAGGTATATCCAAGGTGGGAGAAATGAATGTTTTGATTAAGCCCTCAAGTCCAAAAGACATAGCAGGAAAATGTGAGAAACAGAAGGAGGCTCCTAGATTACCCCAAACTGGTGAGAGTAAGGACTTCTCTGTTGAACTCAGGAGGAGTATTTTTAGGCTTTCTAAGCAAATGGAAGAGCGTCCGCAATCCCTTGATCTTAATGAGAGGGATGAGGAGGACATGTGGGGGGACAATGCGGGGGCTTTAGAGTTGGTGGAGCCGTGGGAAGACTACAGCACAACCAAACAATGGGTAACCAGTCCCCTGCATTCTCCAAAAGGAATAGATTTCCTACAGATGCCCGAGGGAGTGCCTTCATGTGAAAACAGGGAAAATATCTTCTTCAACAAACCTCAAAACTCAGGGGCCTCTGCTCCTGGCAAAGAAGGTTTGAAGGAATTGTGCCTAACTGGTGTCAAAAAGGATTCGACTGATGACTCATCTCCAGGAAATATTGATCTGCAGGACTGTAAGCCAACTTCCATAATCAGTGTGCAAGCTGAGGAGCCCTTATTACCACCCATTGCTTCTCCACACCAGGTTGATGTCCAGAAACATAATGGAATgcaaccagaaaaaaaacagcttgcAACTTCCAAGGACCATCTAACCTTTGAAAAGCCTGCAAAACCCgaatcagaaaacaaagaatCTTTAAAACAGGAAATCACCACAACTTCTCAGAGGCCTAACTTAAAGGAGATGCACAAATTGAAATCCCTAGATGGTTTAGAGTctgacacacagaaagaaaacgTGGTTCTAAAACACAGGCCTTCCTCGCTCAACTTGGACTTGGCAAGTCCCTTTGGTAATACCTACGTGAAAGATGGATCAGATAATCCTTTTAAATGGAGCACTGACGTTTTCTCGGCCGAAACTGCATTGGCCAAGCGAGGTTCAGTGACTCCGTCCGAGACAAAGACCTCAGAAGAATCAGTTGGCAAGATCAAATACAGCACTTCATCTATAGAGCTCGACATGTTCCTGACCGACCGACAAGCTCCGGTGAGAAGGAACTCAGCTCCGGTGAGTGTCTCCTCCGTTAGGACCTCTTTCATGATCAAGACATGTCAAGCCAAGGCGGTCCCAGTGATACCCCCAAAGATCCAGTACACTCAGATACCTCAGCCTCTGCAGGTGAAGAACTCTGAGAGCCTGTCAGAGAAAGACCCAGAGAAACCGTCAAGCAACTCCAAAAAAGAACAAGATCCTCCCCAGTCTCCTCCCTTCACAAGGGATCCCAAGGATTCAGAGAAGGAGAACAACGAACCGTCCCCCAAAACCTCCAGGCAGGCTGGGAGTTATGCTTCCGTGGAGATGCCTCTGTCGAAGTCCACGACCCCAACAGATCCTCCTGTGCTGAGGAGGAAGCGCAGTTCCAATGGAGAGGCCTTCCTGGACTCCAGACTGGACAGATCTCCAGGCCTGCAGAAGCCCTCCTACCGTGCCAGGCCTACTCGGCCACAAAGCCTTATTCTGTTCAGCCCCCCCTTCCCTATCATGGATTACCCGTCGACGGGAGAGGGTGGCAAGTTACTCCTGTCCCCCATCAAGAGCCCCACAGACACAGCAGTCCTGGATAGCTTGTGCAAGGAACTGCCCGAGAACCTGAAGACTCCTGAGGGGGTGACCTTGAGGAGTAAAATGAGCATGCCCAAAAGTGGACAGAGACTAGAAACGTCAACGAGTTGCTTCTACCAGCCTCAGAGGAGGTCCATGATATTTGACAGCAGAAGCAGCAGGCAAATTGAATGA

Function

GO: NA

KEGG:

id description
K20646 ARHGAP31, CDGAP; Rho GTPase-activating protein 31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16972 lncRNA upstream 156104 20424137 ~ 20425842 (+) True G13700
TU16951 lncRNA upstream 178440 20393511 ~ 20403506 (+) True G13685
TU16943 lncRNA upstream 236874 20343424 ~ 20345072 (+) False G13682
TU16941 lncRNA upstream 237861 20342074 ~ 20344085 (+) True G13682
TU16940 lncRNA upstream 262607 20319017 ~ 20319339 (+) True G13681
TU17090 lncRNA downstream 19820 20614745 ~ 20617697 (+) True G13791
TU17100 lncRNA downstream 51910 20646835 ~ 20652272 (+) True G13798
TU17101 lncRNA downstream 58745 20653670 ~ 20655615 (+) True G13799
TU17170 lncRNA downstream 1200337 21795262 ~ 21832148 (+) False AMCG00016490
TU17191 lncRNA downstream 1327228 21922153 ~ 21922461 (+) True G13873
AMCG00016474 mRNA upstream 79757 20499298 ~ 20502189 (+) True AMCG00016474
AMCG00016475 mRNA upstream 98950 20478055 ~ 20482996 (+) True AMCG00016475
AMCG00016468 mRNA upstream 115656 20448350 ~ 20466290 (+) True AMCG00016468
AMCG00016465 mRNA upstream 141862 20435767 ~ 20440084 (+) True AMCG00016465
AMCG00016466 mRNA upstream 147735 20426493 ~ 20434211 (+) True AMCG00016466
AMCG00016482 mRNA downstream 277468 20872393 ~ 20876476 (+) True AMCG00016482
AMCG00016490 mRNA downstream 1187181 21782106 ~ 21804502 (+) True AMCG00016490
AMCG00016489 mRNA downstream 1266863 21861788 ~ 21904114 (+) True AMCG00016489
AMCG00016493 mRNA downstream 1310457 21905382 ~ 21906361 (+) True AMCG00016493
AMCG00016495 mRNA downstream 1339229 21934154 ~ 21935071 (+) True AMCG00016495
TU16114 other upstream 3460014 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 4095943 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 4095943 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 4096798 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 6143340 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 3485092 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 3940093 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 4413037 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 4538273 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 4555558 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile