RNA id: AMCG00016479


Basic Information

Item Value
RNA id AMCG00016479
length 821
RNA type mRNA
GC content 0.55
exon number 6
gene id AMCG00016479
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20616509 ~ 20636960 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGCCAGGGCGACCCGCGCCGGGTGCGCCTCTCTCGGGACGGGCTCGTGCAGCAGACACAGTAACGCACCTGCACGCCGCATTTCTATTTAAACCCTGGATTTTGATACATAATACAAACAGAAAGTCGCCGCCGGCGGTAGTAGTGGAACTGAAGGATGGCAGGAGCAGAGCCCACCACTAAAGTCCTCATCACAGAAGCCCCCGAGCCTGGCGCGCAATCCAGCCCCACCTGCATAGACCCCTACCAGCGCTCTGTGCAGTACATGGAGCAGCACAACATCCTGCACATCTTCCGGtgTTGTGGCCTAGCCCTGATGGCAATGTGCATCTTCTTCATCGTGGATCGGGATCGCTTGTACGTCCTGGTCTACGCCACCGGCAACGACAGCATCTGGAGAGCAGCCTGGATCGGGCTGTTCACGGGATTCGCTCTCTTCTGTACCTCTGTGATGGGGATGTACGCTATTCTGAAGGCAAAAAGGAAACTTATTCTTGCATTTGTCCCCAACCTCTTCCTGAAGCAAATGTTGGAGAACTACAACAAGCCACTGCCTGAAGACCTGCCAAGTACTCAGGATGAGATCTACAGGACTACGGGCGTTACAGATGCATGGAACCGCGTCATGACCCAGAAACAGTGCTGTGGAGTCTACGGGCCCCAAGACTGGGTGAAGTACAACTCACAATTCAGGCAGCAGAACTCCGATTCTGAGTATCCCTGGCCCAGGCAGTGCTGCCAGCAAGATGAAGTGGGGGACATTGTGCACATCAATGCCTGCAAGATTGGCGTCGAGCCCTACGTGTTCACTCGTGAGTAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17347 UPK1; uroplakin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17088 lncRNA downstream 17744 20595329 ~ 20598765 (-) True G13789
TU17050 lncRNA downstream 103105 20468246 ~ 20513404 (-) True G13762
TU17055 lncRNA downstream 124488 20486881 ~ 20492021 (-) True G13766
TU16939 lncRNA downstream 299930 20315742 ~ 20316579 (-) True G13680
TU16865 lncRNA downstream 611569 20003149 ~ 20004940 (-) True G13615
TU17108 lncRNA upstream 9876 20646836 ~ 20652268 (-) True G13806
TU17110 lncRNA upstream 29182 20666142 ~ 20666980 (-) False AMCG00016480
TU17114 lncRNA upstream 124463 20761423 ~ 20761693 (-) True G13812
TU17121 lncRNA upstream 270958 20907918 ~ 20908118 (-) True G13819
TU17178 lncRNA upstream 1145104 21782064 ~ 21782296 (-) True G13860
AMCG00016476 mRNA downstream 92752 20517799 ~ 20523757 (-) True AMCG00016476
AMCG00016477 mRNA downstream 106041 20506848 ~ 20510468 (-) True AMCG00016477
AMCG00016471 mRNA downstream 169478 20441545 ~ 20447031 (-) True AMCG00016471
AMCG00016470 mRNA downstream 190759 20421954 ~ 20425750 (-) True AMCG00016470
AMCG00016472 mRNA downstream 210733 20401388 ~ 20405776 (-) True AMCG00016472
AMCG00016480 mRNA upstream 29790 20666750 ~ 20683024 (-) True AMCG00016480
AMCG00016481 mRNA upstream 287020 20923980 ~ 20973210 (-) True AMCG00016481
AMCG00016483 mRNA upstream 350032 20986992 ~ 21012361 (-) True AMCG00016483
AMCG00016484 mRNA upstream 437134 21074094 ~ 21245418 (-) True AMCG00016484
AMCG00016485 mRNA upstream 1051851 21688811 ~ 21709689 (-) True AMCG00016485
TU16905 other downstream 480962 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 1511128 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 3755330 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 2818132 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 3062189 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 3674077 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 3674077 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 4244188 24881148 ~ 24882098 (-) True G14305

Expression Profile