RNA id: AMCG00016485


Basic Information

Item Value
RNA id AMCG00016485
length 5636
RNA type mRNA
GC content 0.39
exon number 7
gene id AMCG00016485
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 21688811 ~ 21709689 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCATGGTTGCCTTGGTTTCTGAGtcCTGGTTTCCTCCCTTGTTTACTGCAGGTTGCGTGAAGTCGCTGGAGGTTACAGTGAGTCAGAGCAGTGTGCAGGTGGCCAGGGGACAGACAGCCATCTTGCCCTGTACCTTCACTACTAGCGCAGCACTAAACAACCTCAACATCATCTGGATGGTCACGCCGCTGTCTAATGCTAATCAACCCGAGCAGGTGATCCTGTACCAGGGCGGGCAGGTGTTCAGTTTAGCCGCTCAGTTCAATGGGCGAGTGGGCTTCGTCATCACCATGCCCAGCACAAGTGCCTCGATCTTCATCAACAACACTCAGCTGTCTGACACCGGAACATACCAGTGCCTGGTGAACAACCTGCCCGACAGGGGCGGCAGAAACATCGGGGTGATCGGGCTCACAGTGCTAGTGCCCCCCTCCATCCCCTCCTGCAGGATCCAGGGCAGTCTGGATGTTGGGAGTGACATCATGCTGATGTGCAGCTCTGAGGAGGGCATCCCCACGCCTACCTACGGCTGGGAGAAACTCGAGTCTGTCCCCAAGCTGCCCTCCACCGCCATGCAAGATCAGATGCAGGGTACGGTTACATTACGGAACATCAGTACGGCGAACTCGGGCCTGTACCAGTGCACGTCTTCCAATGCCATTGGCAAGAGCACCTGTCTCCTTAACCTGCAGGTTGTAGCACCCCAGCCTCAGAGCGTGGGCCTGATCGCCGGCACCATCGCCACGGGCGTCCTGGCCGTCATCATCTGTGTGCTGCTGGTCGTGGTCATGCTTTTCTACTGGAAAAACAAGAGCAAATATGAAGAGGACGAAATTCCCAATGAAATCAGGGAGGACGACTTGCCGCCAAAGAGATCCTCCTCGGTGAAGGCGTTCCACGCAGATGCCTCGTCCTCAGAGAACGACACACTGACCTCCACCAACACCTACAACAGCCGCTACTGGCACAACCCCAAGCCCAACTACGACACCAACTCCTACACGCGCTACAATGGGGACACTCGGCAGACTTTCTCTGCCCACCACCCGGGTGCAGCCACTCAGCCCCGCCCGGCTTTCGCCAATGGCAGCCATACTCTCCCCCCTCCTAAGACCCTGGTGGTCACCACAAACTCTGCCCCCTCCCCGCAGGCCATCGTGCGCAGCAACGGCTCTCTCAGCCTGAAGCCGCCGGCACCACACGGGCAGCACACGCACTCCTATGCTGTGAGCCAGGCCACGCTGGAGCGCATGGGCGCCGTGCCCGTCATGGTACCGGCGCAGAACAGAGCTGGCTCTCTAGTATAGACCTGACACCTCTATCTGCACAACTGGATTTTTACAAATAGAGTTCATCTAATGCCAACTTTCCgaatacttttttaaagtaGCACctggatgttttctttttcttttatttcttttctttttacattttatttaattaacttttactGCTTTTTTACAAAGCGATGAAAGCTTTTAGTGTATTTAATTCTGCGGAGAAGAGGATGGCTGCGATGCTGTGCCATTAACAGCACTGTGCTGAGGGTCGTCGTGCAGATGCCACCATCAACACAAAATGAgaatgtttttgaaagtttgttactaaaacataattacacttgtaataaatacatatgctgATTGTAATTACATGGTAATTACATTACATGTGTCATTGTGGTAACATGAataccacacacatacattatatataagaTACAtatactatgtgtgtgtgtatgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagttttacaACACATTGTATAagtcttaaattaacaaaatgaatacacaagATGGGAATTACCTTAAGTAAAGACTAACATAGAGGTATGCtctaatatttattgtaaataaaggcATAATCTGCATGTTTTGGTGTTCAAATACAAGTTCCCAGAGTAAGTGTTAGAGTACTATTTGAAAGTCACTCTTGCATTTTGATTAAATGGAACAAATTCCTAATTGAAAGAGAGATTCAGGAATCATTCTAAACTGACTGAACTTCTCATGTTATATGGGTTTTCAGAATGGAAAATGTCACCACTGGACAAATGGGTTTCCCACTCTTTGTACTGTACCCTTTTATATAACTAAAATCCGAAGGATACTAATCTAATGACATTGATTAATTAACAAATGATGAACAGCAGTTatcaaaaaaaaatactataattacTCATGCATTAAAATATCCAAATCAAATCAGAGGAAAGTGATTATACAACATGTGTagtacaatatttaaacactatGTATGTTACAGTAATGGGACAATGCCCCACAGATGTCCAAGCTCAGAAGCAAAACTCTCAGATCTACAAACATGCAAGcaagcacacactcacacttacacacacatttaggtTCTTAATCTGTTttccaaatgtttgttttactcaatCTTGCCatgcacaacatttttaaatgattgtatgTAAAGGAGGAATATCAtcctgtttaaaaaagaaaaagaaaaaagaagataTTCACTATGACTATTTTGTACTGTAAATAACAGATCCAGGTAAAGCCAGAAATGGGGGGGAAGGAGATAGGGACATCATTTATTTGCCCAGTGGCGATGATCTATTGTGTCTTAATTTAagaggttatttttatttttttatttctaatatcagAAACATGTAGCAGTTTCTGGGAAATGTTCTTGctgttgtaaatgtgtaaataggGGACTTGAAACACAACCCAAAGCTGCCATTGCCAGTTGCAGGTtagagggggggtgggggtcttACCGTGAATGTAACCCTCTGTGGTGCAGCATgcacagcattttaaatgaatacatttaaacacaaacacgtCAGCACAGTCAGATTACCTGCAGAAAGGAAGGGGGACtgctcttgtttgtttgtgttctaaTTGGTTATTATGATTGAATGAACAAATGAGTTAGTAGCAAATCCGGgagcttttttctttccatgttttGAATATGacatattttgaatttgaattctgGTGTGTGCCATAGAGGGTTACTCACTGAAGTAGAATGTTCTGTTTCATCGTGCTGTTGTCATACCATTGTCTGCGGTTTCTCAAAGGAGGCCGAGTGGTGCGGGGCAAGTCCGAGCTGACCAGGCAGGATACACTGTATATTGCAGTCATTTTATAACGTTATTAGGAATATGGATGCAAACCAGTGTGAGTTGCTTAACAAATCCTATTCGCATTACCTTGGCCTTAATTAGCACGTGCTCCAGCCCTTTGTGTGTGATATTCCTTAGTGTGTGGACTTTGTAAGGAGGTACTTTGGATACAGCTATGGTATGACAACACCTCTCTTTCCGATGTGAACAAGCCAAATGCCAGAGTAAGTTGTtcctgatttagtttttttcagtgataatatatatatatatatatatatctcctgTGCTTGCATTAAATGAAATATCCCTGTTTTAAGGAGCAAACTGTTAGCAAGATGATGATGACAGCCACATGTAAAGTCTTAACTTGAGCGCTTTTTAACCCTTTCACTGTGTAATCAATATACAGGTCGGTTCCCCAGGAGGGTCAATTCTTCACCAACAAAGGAAATTATGAATTCCTCCTCTTGCACTAATATTTTTATATGGACACTAGGTATACTTTCCACACCTGAAAACCATATTTCatagtgaaataaatgtataaataaaataattgtgaaaataagATGAAACATTGTCTCCAATGAGCAGTGTAAATAAAGGCATAACTAAGTATATGAGTTCATCATTATTACAGAATATCAAATATTTTCTATAGAGAagattattgaaatataaagtAACACAATAGTGCTTATACAGAATGTATAGTAATATAAaagtaatgtaaattaaacaaagtaattcATAAAATGTTGTTAAACTGGCAATTCTGTAAAGGATTTTACttagaaattattttgaattgtcaaATTATAACCTTCCAAAAACTCTGGACAATTTAAGAACAATGTGAATTGCAGAATTAATTATACTTTCATAGAATAATAtctcatacaaatatatagttattctttatatatatataatataatatacatcaGTGAATTACACAATtcctttatattatattaccttaaaatatatatttaacaataacaatcagtAATAAACATCCTTAAGTATCCTTCACATCATAATGGCATCCTGTATTTCATTGTTATGTAGAATTTCCTATATGTActgcacatttaattttgttcttatatttcacttttgtatGGTAGTCTTCAAAGCCCTGAATTATGCACAGCACAGATCTCTCAGGACACAATGCACAGTAATATGGCATGTGTTTGTATACTACTGCATATGTAGGAAGGGGCTCTTGAATGTGCCACTTGAAGTAGTTTGTTGGGTGATGTGTTCCAAATTCCATGGTGAAAGATAAATGAGCATTTGTTTGGATATATCTGCATTCCACAATGAAAGggttaatacaaatacattcattaataaacaGATATACCATAGAGTTACTGTGGTCATTTGGATTTCAGGCAACATATTAAGTGAAGCCAGGGTAGGGAATACACAAAGTGTTCTTATAAAGCCCCAGTATTACGATGATATTGGTATTGTCCTTGGAAGTGCTCTGAAGTCTGTATGCAGCTTTATTATCCCAATATTTTGTTACATAGGGAGCAGAAATGTCCCAAGTGTGTGGAAATTTCTTCCAGAAAAAGCTTTAAGTGCAAAACCAGTGCaccattttcagaaaacaaaaaacaagaaactattTAATAACGATAAATGTAATCAGACTGTAACTAAAGTTGAATCAGTTTGTCTGaagtaaatatttgcattgttttttgcaaGAGCCcaataatgtgtgtttatatgtgtgtgtctaccATTGCAGATGGAGACAggaaattcattaaaatgtatatgacatGATGGGTACTACATTATTCAATCAAAGCAGGCCTGCTATTCTCTTTACAGACACCCAGGTTTCTTCCAAAATAACAGATTCACACAGTTTGCACAAAATGCTAACAGATTTGAGTCTTTTGTTactgattcttttttttctctctgaatggaactgtaacattatttatatatatatatatatatatagtttatgttttgattcatttttttgcaTTACTTTCAGATCCAAAAGGTGCCAGTAATGCGTGTGTGAGTCTTTCACAAAGTCCCTGAGCTTAAGCAAACAGCTTGAGGATGAATCATTATGTCAGGTGcattttgcttttggttttgctttgtgtattaaagtcatacatacatttaaagtcatacattttattgattaatttatattttattgaaggtTGAATTAAATATTCACTGTTTCCTGTAACAGTAATTAATTgctgaagaaacaaataaattagGCTGTGTTTATGATGGTATCTATTATGTTTTGAGAACgtttcaaaaatactttttaactCTTCATACAGCTTGCACATGTCGAAACACAATGTTCCAGAGTAACATTAAGACTGATTAGCTTTAAATAAAGaactattatattttatgacatatatatatatatatatatatat

Function

GO: NA

KEGG:

id description
K06791 IGSF11; immunoglobulin superfamily, member 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17121 lncRNA downstream 780693 20907918 ~ 20908118 (-) True G13819
TU17114 lncRNA downstream 927118 20761423 ~ 20761693 (-) True G13812
TU17110 lncRNA downstream 1021831 20666142 ~ 20666980 (-) False AMCG00016480
TU17108 lncRNA downstream 1036543 20646836 ~ 20652268 (-) True G13806
TU17099 lncRNA downstream 1051873 20630472 ~ 20636938 (-) False AMCG00016479
TU17178 lncRNA upstream 72375 21782064 ~ 21782296 (-) True G13860
TU17179 lncRNA upstream 75555 21785244 ~ 21785716 (-) True G13861
TU17202 lncRNA upstream 432264 22141953 ~ 22142185 (-) True G13884
TU17205 lncRNA upstream 462861 22172550 ~ 22172940 (-) True G13887
TU17211 lncRNA upstream 480227 22189916 ~ 22226828 (-) True G13891
AMCG00016484 mRNA downstream 443393 21074094 ~ 21245418 (-) True AMCG00016484
AMCG00016483 mRNA downstream 676450 20986992 ~ 21012361 (-) True AMCG00016483
AMCG00016481 mRNA downstream 715601 20923980 ~ 20973210 (-) True AMCG00016481
AMCG00016480 mRNA downstream 1005787 20666750 ~ 20683024 (-) True AMCG00016480
AMCG00016479 mRNA downstream 1051851 20616509 ~ 20636960 (-) True AMCG00016479
AMCG00016486 mRNA upstream 201181 21910870 ~ 21921639 (-) True AMCG00016486
AMCG00016488 mRNA upstream 239579 21949268 ~ 21952193 (-) True AMCG00016488
AMCG00016487 mRNA upstream 307435 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016497 mRNA upstream 367928 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016504 mRNA upstream 2131373 23841062 ~ 23862739 (-) True AMCG00016504
TU16905 other downstream 1553264 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 2583430 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 4827632 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 1745403 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 1989460 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 2601348 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 2601348 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 3171459 24881148 ~ 24882098 (-) True G14305

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017491 True 1329 mRNA 0.58 7 NC_007126.7 46386261 ~ 46598864 (+)
grasscarp (Ctenopharyngodon idella) TU406463 False 3734 TUCP 0.46 8 CI01000149 77306 ~ 97707 (+)
mexican tetra (Astyanax mexicanus) TU406463 True 1285 lncRNA 0.39 3 NW_019172826.1 61417 ~ 63323 (+)