RNA id: AMCG00016488


Basic Information

Item Value
RNA id AMCG00016488
length 1203
RNA type mRNA
GC content 0.40
exon number 2
gene id AMCG00016488
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 21949268 ~ 21952193 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGAAGAGTTCCAAGGATCAAATGTTTCACAcacaaagtttgtttttatgggGTTCCCTGAGCTGTACAGATACCGACGTCTGCTCTTCCTACccttttttataatatatgtggTTGTTTTGGTTGGAAACTCACTAATCCTGTTTGTGATAAAAACCTGTGCGAGTCTCCACAGCCCTATGTACATACTGATATCTGGCATGGCCGTCATTGACATAATCGTCCCGACAGCTATTATCCCCAACATGCTGCTCAGCCTTTTGTTTGACTGGAATGAAATCTCTTTGCAAGGCTGCCTGAAAATCTACAAgtacagacatctgctttttgtaccATTCTTTGCAATGTACATTGTTGTCTTGGTAGGCAACTTGTTTATTCTATATGTGATAAAACAGAGTGAGAGTCTCCATAGCcctatgtatgtattcatatctgCCCTTTCCTTTGTAGATATAGTTGTCCCCACTGCCATTATTCCAAAAATGCTGCTTAGCTTCTTATTTGACTGGAATGGGATTTCCTTGGCAGGCTGCCTCATTCAGATGTTTGTCATTCACTTCTTCTCCTCGCTTGAATCAACAATCCTCTTAGTAATGGCTCTGGATCGTCTTGTGGCCATATGCAATCCCCTGCGCTACAATGACATTGTGAACTCCTCAATGTTTCTGAAACTCTGCATTTTCACCATCATAAGAAGTGGATCAATAATGTCCTCCCTCGTCATTCTTGCCCATCCTCTGTCTTTCTGTAGGTCAAATGTCATTAACCACTGTTACTGTGATCACATGGCGCTTGTTTCCTTAGCCTGTGACAATACCACTAAAAATGATATCATGGGATTGGTGGTGAtacttgtgtttgttgttggtgACATTTCAGTCATAGTCTTTTCGTACATCAGAATTTTAAAGGCTGTCCTTAGTGCTACATCAGCAGAAGAACGTTGGAAAGCTTTCCACACATGTGGCACTCATTTGATAGTTATGCTTTTCTTCTACCTAACAGGCACTGTTGCATTCCTGGCACATAATCTTAGGATAGCCATTCCAACAGATGCTCACACATTTTTGGGGGTAATGTACATTGTTCTGCCAGCTAGTGTCAATCCGATTATTTATGGTGTCCGCACAAAGGAAATCAGAAATGCCATCATTAAAATATtcagagtgaaaaacaaaactgatattCTAAAATAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG:

id description
K04257 OLFR; olfactory receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17179 lncRNA downstream 163552 21785244 ~ 21785716 (-) True G13861
TU17178 lncRNA downstream 166972 21782064 ~ 21782296 (-) True G13860
TU17121 lncRNA downstream 1041150 20907918 ~ 20908118 (-) True G13819
TU17114 lncRNA downstream 1187575 20761423 ~ 20761693 (-) True G13812
TU17110 lncRNA downstream 1282288 20666142 ~ 20666980 (-) False AMCG00016480
TU17202 lncRNA upstream 189760 22141953 ~ 22142185 (-) True G13884
TU17205 lncRNA upstream 220357 22172550 ~ 22172940 (-) True G13887
TU17211 lncRNA upstream 237723 22189916 ~ 22226828 (-) True G13891
TU17214 lncRNA upstream 283978 22236171 ~ 22236399 (-) True G13893
TU17216 lncRNA upstream 408321 22360514 ~ 22360776 (-) True G13895
AMCG00016486 mRNA downstream 27629 21910870 ~ 21921639 (-) True AMCG00016486
AMCG00016485 mRNA downstream 239579 21688811 ~ 21709689 (-) True AMCG00016485
AMCG00016484 mRNA downstream 703850 21074094 ~ 21245418 (-) True AMCG00016484
AMCG00016483 mRNA downstream 936907 20986992 ~ 21012361 (-) True AMCG00016483
AMCG00016481 mRNA downstream 976058 20923980 ~ 20973210 (-) True AMCG00016481
AMCG00016487 mRNA upstream 64931 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016497 mRNA upstream 125424 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016504 mRNA upstream 1888869 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016505 mRNA upstream 1912388 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016512 mRNA upstream 1941230 23893423 ~ 23902805 (-) True AMCG00016512
TU16905 other downstream 1813721 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 2843887 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 5088089 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 1502899 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 1746956 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 2358844 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 2358844 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 2928955 24881148 ~ 24882098 (-) True G14305