RNA id: TU17170


Basic Information

Item Value
RNA id TU17170
length 3826
lncRNA type sense_over
GC content 0.61
exon number 4
gene id AMCG00016490
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 21782106 ~ 21832148 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TgccaatgcattttattttgtcctattatttttgtaatgagtCCCTTAAtgagcacacacacatctcatTATTTCACTGATTTGGCATCTGAATGCATCTGAGGTATGTCCAGATGTCACCACCTCCTGCACACTCAATCCATTACTGCACAATTGGCTGTGTGCTCTCTTAGCATCTCTGTTTGTAGGTTTGTTTGCAATGATTCATGTGTCCAGTGAAATTGGGAAAACACATGTCACTGTACTTGTTCCCACAGAGCTGATGGATTCAAGTGTGGATCTGACAGCAGTAAGGCAATTTTTAGTCCTGATGGAAACTATGTGGCAGCTGGATCTGCTGATGGTGCTGTCTATATCTGGAATGTGAATTCGGGAAACCTGGAGACCTGCTTACCTGGGATGCACTGCTCCTCGATAGATGCTGTGTCCTGGTCTCTGTCAGGGGAGTTTTTTGTTAGTGTGGACAAGAGCAGACGGGCTGTGCTGTGGAGTGACATATGATCCGTCCAACTCCTGATCTGGACTTTAGAGGGAAATTCACACACGAGTTCAGACACTCCTGGATGAATAGAAGGTCTCATCGTCACAAGTGACACACTTACCGTCACATAAAAGTGAACCAACATCAGAGTTGAGGTGGAAGGTACTGCAAACCACCTCTACCAGACTTCATAGGCCCTGGTTTGAGCCAGCTCCAATACAgtgttttctaaaaaaaaaaaaaaaaaagggaagacCTGGTGTTTTTTGGACAAAACCCTTTCAATCTTCCACTCCTGTGCCATAACTGTTTTGTGAAGTGCAACAGACGGCAAAGCGGAAAGGTATTATATCGGCGAAACAAAGTATAGATGTTGACGCTGCCGCAGTCCTTTGTGCGTGACTTGATTGCAGGTTGGCGCGTCTTATGCACAACGAATGGATATATCTGAAGACAGACCTTCCTTGCCACCATTTATTCTTGTTACTAATTCCATCTACAGTTACACACGTCTGCATTGTGGAAGACCAGAAAAATGCTTACATTGAATGTTCTTCTCCCTTCTGTCGCACTTTTGAGCACATTGCTTACTTGGAGTGCATATACCTTCCTACTGAGGGTAATGTTTACAGGAAGTGTTCTTTgctgcctttaaaaaaatgcagagatGTCTTAATTTAGGATGTGAATTCCAATTTTCTCATGAGAGCTGTATTTAAACTCTGGAAAGCACACAGCGTAAATAAGTCTTTTAAAGACCTTTGTGCCCTTTGCTTTGAAAGCtgtaaagaaaaggagagagtgATGTCTGTGATTATCTTCAAAGACTCCAGCTGTAAAATATGAGCATTATCCCTCTCCCTTTGCTCTATTGATAGTGTTATGGGGTTGTTATGACTCATGGAAGCAATATTCCAAGGCACTTACGCTGCTTTGATAATTATAAGTCTTTTTATTATAAGGCTTTGTAATAATTGGTCAGGTTCTTCTCCTTGAATTTGGTGTTGGAGGTTTATGTCGCTGTTGTTGCTGAAGTGCCTGGGAGGTGCCCTAACACAGCCTGTTAGTGCTAATACAATATAATCCCAAAGGAATTTTTGCATTTCTAGGATAACAATTCTTGTACAGGAAGACAATGCAAGAGTAATTTTGGTGCTTTTTCCACTCACAAACTCCACTATAATCTGTAAAACCAATACAGCCTTGCTCTCTGTAAACAGTCCTTCAGAACAGGGAAAATACGTAAACCTGATTTCATTATCCTGTGAGAGCTACAGTATTGTCATGATATAACACGACAGAGCTGCACAGCTGTTCTTTTCCCACCATTTCGTTTCCTCTCCCCAAAAAACTGTTTCCCTCATTAGATAATGACAAACAACTCTGTCAATATAATGATTAACATGTAGAAATTAAAATCTGGaggaaataacaaaacaagaagcacttacaaataaataccttCCTGTTTCTGTTGGAATTTGATTTAGAAAATGATGTACATGATTTAAGCCACTTTAATCTCCTGGTACATAGTGCTGTCTGTCCATTGGTAGGAATTATGGTCctttattagtttatttggCTGTACAGTGCTCTTCCAGTTTCATATTGTGACAGACCAGTGTTCAGCTTTCCTAAAGCCCTGTTTACTTCTTTGGAGTCTCATTATCTTTTGATCAACTTCCTAATTGAGAAGAAAGGGAGGTACAAAGATGACTTCTTACTTGGAAAGCTTTATGCTATTACTACCAATACAGCAGGAAGGTAAAATGTATCAGGGACTGACAACTAAAATTTGGTTGTCCAATAGGGCAGGTGCCTTGAAATTGTACTTGCCCCTCAAAAAATACACCTGCTCGACTTTTTGCACAAAGATTATAAGCAGTGGTGGTGtattggtaaaataaatgtaccGGAGAAGTCCCAATGGGAATTGTTGACCGATGGGACTGACGGAAGTTTGCTGAGTACCGAGTGCTTGTGTTCGGAAACAAATACTTTGTAGATTGCATGTCCATTTCCGATGTAATCAAATCAGCTGAGATGACATAGAATAAAATTTTCACTTGCCCCGTCGGGCATGTAATCTACCAAATAAGCCTGCCCAACAGAACTTGGAACCTgtgtcaagcagtcaggccatCCCTTATGTCGAACCATGTATATAAGAAATGTTCATTGCTGCTTCTGTTGCTGACTGGCCATGGCTCTTCTCGGATACTTAGTTGTACATAATTAAATCTGTTCTGTCTGTGTGGTTCTACGGACATAAATACACACTACACCCCCCAGGGGGCGAATGTAAAGAGCTGAAAAAGCTAAAGAAAGCATGAGTGGATCCGACAACCGTTCATTGCCGCACCAACTGAAATTGCAATGGATAAACTGATTCCTTTTACATCAACCTATCTCTGTGAAACTACTTTTTCTACACTTAGATTCATTAAACACAAACTACGGTCACGACTCACAAGCGTGGAAATCGGTTCTCGGATTATGCCATATCCAGTaatggccaatcagaatagaggattgtcaGGTAGCAGTGCTTCTTGGTAGTTTCAGATTAAACTACACAGCAGTTAATGTGAGGTGAtgattacagtaaaataaagacataataGTGGGAAACGAGCTTGCCAGGaatctctgctgcaatattttcaaaatgcattaacaaacaaattaaatggcaGTAAGAAAAAATCAACGACTGAGGCCAATAGTGAAGAGACGACAACACTGCAGCTGGAGTCCATGGTTAAACATTGAGTTCAGGTAGGAGAAGAAAAACTATACACTTCCCTTGATCGTGCAGATGGTAATCTGGGATGTTGAGTGTAGACACGTTTCtacttttgtctgttttaaaaagttggcaactgcagaaatgtgttaattattattattttttttttaacaaagtcgctatatattattttttaaataactggtaaaattgtatgaaatggaaagagggcATTATCATCATCTTTAACTACGTTTATTGATTCTGATTGGGGCTAATTTAtggataatgtatttttaaccaaGAGTTTTAATGTCAGTAGAGTTGGCCTTGTTGGAACTGTATGCACATTATGGAGTTTGCTCAGGTCTTTCCTGTTCACttaattgaaaaattgaataaaCTAGCTTGGTAGAAACTAgactaaaaacacacaaacagacatatatatatatatatatgatactctctgtatttttgcacttatgtgtaagtcgccttggataagggcgtctgccaagaaataaaaataataataataatatatatatactcacctaaaggattattaggaacacctgctcAATTTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17101 lncRNA upstream 1139647 20653670 ~ 20655615 (+) True G13799
TU17100 lncRNA upstream 1142990 20646835 ~ 20652272 (+) True G13798
TU17090 lncRNA upstream 1177565 20614745 ~ 20617697 (+) True G13791
TU16972 lncRNA upstream 1369420 20424137 ~ 20425842 (+) True G13700
TU16951 lncRNA upstream 1391756 20393511 ~ 20403506 (+) True G13685
TU17191 lncRNA downstream 90005 21922153 ~ 21922461 (+) True G13873
TU17213 lncRNA downstream 404023 22236171 ~ 22236399 (+) True G13892
TU17215 lncRNA downstream 497915 22330063 ~ 22330299 (+) True G13894
TU17223 lncRNA downstream 646188 22478336 ~ 22478597 (+) True G13902
TU17250 lncRNA downstream 1082648 22914796 ~ 22915056 (+) True G13928
AMCG00016482 mRNA upstream 918786 20872393 ~ 20876476 (+) True AMCG00016482
AMCG00016478 mRNA upstream 1200337 20581946 ~ 20594925 (+) True AMCG00016478
AMCG00016474 mRNA upstream 1293073 20499298 ~ 20502189 (+) True AMCG00016474
AMCG00016475 mRNA upstream 1312266 20478055 ~ 20482996 (+) True AMCG00016475
AMCG00016468 mRNA upstream 1328972 20448350 ~ 20466290 (+) True AMCG00016468
AMCG00016489 mRNA downstream 29640 21861788 ~ 21904114 (+) True AMCG00016489
AMCG00016493 mRNA downstream 73234 21905382 ~ 21906361 (+) True AMCG00016493
AMCG00016495 mRNA downstream 102006 21934154 ~ 21935071 (+) True AMCG00016495
AMCG00016492 mRNA downstream 158258 21990406 ~ 21991423 (+) True AMCG00016492
AMCG00016491 mRNA downstream 213217 22045365 ~ 22056229 (+) True AMCG00016491
TU16114 other upstream 4673330 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 5309259 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 5309259 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 5310114 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 7356656 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 2247869 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 2702870 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 3175814 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 3301050 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 3318335 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile