RNA id: AMCG00016494



Basic Information


Item Value
RNA id AMCG00016494
length 634
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00016494
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 22146673 ~ 22157270 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aaaacagCTGTGTTTAAGCAGAGAGGTGGAAATGCAGCAAAATCAAAGTGGAATTACATCTCACACAGAATTTCTTCTACTTGGATTTTATGGACTCGGAGGATACAGACAATTTCTTTTCATGCCTTTCTTTCTGATGTTTGTACTGTCTTTTCTTGGTAACACAGTGCTGATTATCACTATTACAGCAGGAAGCAGTTTACACTCTCCCATGTATGTGTTAATATGTATCAATGCCTGTGTAGACCTTACATTGTCAACTCTACTGTTAGGAATGGCTTTAGATCGCTATGTTGCCATATGTATCCCACTGCGCTACAATGATTACATCAATATTTCAAGTTTTTTAAAATTCTCTACTTCAACTGTTCTTCTAGGGATGGCTCTGGATCGCTATGTTGCCATATGTATCCCACTGCACTACAATGATTACCACATGGCTCTGGTAAGCTTGGCCTGTGGAAACACCAGCAAGAACAGTATCATTGGGCTGCTTTCAGTGTTTTCTATCACAGTCACCGATGCTGTGCTCATTGTGATTTCATACATCAAAATTTtctgtgatgtttttaaaacacactcaGGAAAATCCCACGGAAAAGCAATTCACACCTGTGGCACTCATTTAATAGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU17191 lncRNA upstream 224212 21922153 ~ 21922461 (+) True G13873
TU17170 lncRNA upstream 314525 21795262 ~ 21832148 (+) False AMCG00016490
TU17101 lncRNA upstream 1491058 20653670 ~ 20655615 (+) True G13799
TU17100 lncRNA upstream 1494401 20646835 ~ 20652272 (+) True G13798
TU17090 lncRNA upstream 1528976 20614745 ~ 20617697 (+) True G13791
TU17213 lncRNA downstream 78901 22236171 ~ 22236399 (+) True G13892
TU17215 lncRNA downstream 172793 22330063 ~ 22330299 (+) True G13894
TU17223 lncRNA downstream 321066 22478336 ~ 22478597 (+) True G13902
TU17250 lncRNA downstream 757526 22914796 ~ 22915056 (+) True G13928
TU17262 lncRNA downstream 852847 23010117 ~ 23010500 (+) True G13938
AMCG00016491 mRNA upstream 90444 22045365 ~ 22056229 (+) True AMCG00016491
AMCG00016492 mRNA upstream 155250 21990406 ~ 21991423 (+) True AMCG00016492
AMCG00016495 mRNA upstream 211602 21934154 ~ 21935071 (+) True AMCG00016495
AMCG00016493 mRNA upstream 240312 21905382 ~ 21906361 (+) True AMCG00016493
AMCG00016489 mRNA upstream 242559 21861788 ~ 21904114 (+) True AMCG00016489
AMCG00016496 mRNA downstream 169529 22326799 ~ 22327023 (+) True AMCG00016496
AMCG00016498 mRNA downstream 499390 22656660 ~ 22667322 (+) True AMCG00016498
AMCG00016499 mRNA downstream 821624 22978894 ~ 22984657 (+) True AMCG00016499
AMCG00016501 mRNA downstream 1496124 23653394 ~ 23716846 (+) True AMCG00016501
AMCG00016500 mRNA downstream 1571578 23728848 ~ 23751132 (+) True AMCG00016500
TU16114 other upstream 5024741 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 5660670 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 5660670 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 5661525 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 7708067 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 1922747 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 2377748 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 2850692 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 2975928 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 2993213 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile