RNA id: AMCG00016495


Basic Information

Item Value
RNA id AMCG00016495
length 579
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00016495
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 21934154 ~ 21935071 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGTTTCCTGGCATAGAGCACCTGCAGCACTGGCTTTCTATCCCTTTCACTGTCTTGTACATCACGGCCTTAGTAGTTTTAACTGGGCTGATTCCCACCTTGGCCTCAAGATTGCCTTACTGCTCATCTGTTTGTATATCTCATTGTTACTGCGATCATATGGCTGTGGCTAAACTGGCATGCACAAATATAATCATGAACAATTATTATGGACTCTTTGTGGCACTTTCCATATTAGGTGTGGATGCAATATTTGTTGGATTTTCTTATATAATGATATTTAGAGCAGTCCTAAAGCTTGGATCAAAGGGAGCTCGCCTTAAAGCACTAAACACTTGTGGTTCTCACTTGTTCGTTATCATGTATTTCTACATAATTTccctgtttaattatttagtctACAGGTTTGGGAAGGATGTACCAGTCCATGTTCACGTTGTTTTTGGAGTCTTGTATCTTCTCATTCCTCCAGTGTTAAACCCTATGGTTTATGCTGTAAGGACCAAGGAAATCCGTCACGCATTTCTGAGGCATTTCCTGCCAAGAAAGATTGACTCAGATTTGAGTCATCGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17191 lncRNA upstream 11693 21922153 ~ 21922461 (+) True G13873
TU17170 lncRNA upstream 102006 21795262 ~ 21832148 (+) False AMCG00016490
TU17101 lncRNA upstream 1278539 20653670 ~ 20655615 (+) True G13799
TU17100 lncRNA upstream 1281882 20646835 ~ 20652272 (+) True G13798
TU17090 lncRNA upstream 1316457 20614745 ~ 20617697 (+) True G13791
TU17213 lncRNA downstream 301100 22236171 ~ 22236399 (+) True G13892
TU17215 lncRNA downstream 394992 22330063 ~ 22330299 (+) True G13894
TU17223 lncRNA downstream 543265 22478336 ~ 22478597 (+) True G13902
TU17250 lncRNA downstream 979725 22914796 ~ 22915056 (+) True G13928
TU17262 lncRNA downstream 1075046 23010117 ~ 23010500 (+) True G13938
AMCG00016493 mRNA upstream 27793 21905382 ~ 21906361 (+) True AMCG00016493
AMCG00016489 mRNA upstream 30040 21861788 ~ 21904114 (+) True AMCG00016489
AMCG00016490 mRNA upstream 129652 21782106 ~ 21804502 (+) True AMCG00016490
AMCG00016482 mRNA upstream 1057678 20872393 ~ 20876476 (+) True AMCG00016482
AMCG00016478 mRNA upstream 1339229 20581946 ~ 20594925 (+) True AMCG00016478
AMCG00016492 mRNA downstream 55335 21990406 ~ 21991423 (+) True AMCG00016492
AMCG00016491 mRNA downstream 110294 22045365 ~ 22056229 (+) True AMCG00016491
AMCG00016494 mRNA downstream 211602 22146673 ~ 22157270 (+) True AMCG00016494
AMCG00016496 mRNA downstream 391728 22326799 ~ 22327023 (+) True AMCG00016496
AMCG00016498 mRNA downstream 721589 22656660 ~ 22667322 (+) True AMCG00016498
TU16114 other upstream 4812222 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 5448151 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 5448151 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 5449006 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 7495548 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 2144946 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 2599947 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 3072891 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 3198127 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 3215412 25150483 ~ 25157461 (+) False AMCG00016566