RNA id: AMCG00016496



Basic Information


Item Value
RNA id AMCG00016496
length 225
RNA type mRNA
GC content 0.61
exon number 1
gene id AMCG00016496
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 22326799 ~ 22327023 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCCAGTGATGGGACCCGCCTGGATGACCCCAGGGCCCCACCAAGCCGCGAGAGGATGCAAGGATCCGGTTGGCACATTACGACGGGTCGGTGGACTGGGAGACTTACGAGGCCCAGTTCCAGCTGGCAGCATGGGCTGGACAATGGACCCCAGAAGAGAAGGCCAGAAAACTTGGATGGCAGAGCTCGACAGGCTCTCCTGGATGTGCCCGAAGAGCGTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU17213 lncRNA upstream 90400 22236171 ~ 22236399 (+) True G13892
TU17191 lncRNA upstream 404338 21922153 ~ 21922461 (+) True G13873
TU17170 lncRNA upstream 494651 21795262 ~ 21832148 (+) False AMCG00016490
TU17101 lncRNA upstream 1671184 20653670 ~ 20655615 (+) True G13799
TU17100 lncRNA upstream 1674527 20646835 ~ 20652272 (+) True G13798
TU17215 lncRNA downstream 3040 22330063 ~ 22330299 (+) True G13894
TU17223 lncRNA downstream 151313 22478336 ~ 22478597 (+) True G13902
TU17250 lncRNA downstream 587773 22914796 ~ 22915056 (+) True G13928
TU17262 lncRNA downstream 683094 23010117 ~ 23010500 (+) True G13938
TU17263 lncRNA downstream 683623 23010646 ~ 23010869 (+) True G13939
AMCG00016494 mRNA upstream 169529 22146673 ~ 22157270 (+) True AMCG00016494
AMCG00016491 mRNA upstream 270570 22045365 ~ 22056229 (+) True AMCG00016491
AMCG00016492 mRNA upstream 335376 21990406 ~ 21991423 (+) True AMCG00016492
AMCG00016495 mRNA upstream 391728 21934154 ~ 21935071 (+) True AMCG00016495
AMCG00016493 mRNA upstream 420438 21905382 ~ 21906361 (+) True AMCG00016493
AMCG00016498 mRNA downstream 329637 22656660 ~ 22667322 (+) True AMCG00016498
AMCG00016499 mRNA downstream 651871 22978894 ~ 22984657 (+) True AMCG00016499
AMCG00016501 mRNA downstream 1326371 23653394 ~ 23716846 (+) True AMCG00016501
AMCG00016500 mRNA downstream 1401825 23728848 ~ 23751132 (+) True AMCG00016500
AMCG00016503 mRNA downstream 1441113 23768136 ~ 23815510 (+) True AMCG00016503
TU16114 other upstream 5204867 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 5840796 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 5840796 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 5841651 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 7888193 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 1752994 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 2207995 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 2680939 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 2806175 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 2823460 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile