RNA id: AMCG00016497


Basic Information

Item Value
RNA id AMCG00016497
length 1350
RNA type mRNA
GC content 0.37
exon number 3
gene id AMCG00016497
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 22077617 ~ 22085342 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgcaacaaaatcaaaaaggaaatacatCTCACACAGAATTTCTTCTGCTTGGATTTCAGGGACTTGGAGAATACAGAAGATATCTTAGCATTCCTTTCTTTCTGATAGGGGTATTGTCTTTTGCTGGTAATGCACTACTCatattcacaattaaaacaagaaatagttTGCACTCTCCCATGTATGTGTTAATATGTATGAATGCCTGTGTAGACCTGACTTTGCCAATAATTTTTGCCCCGAAAATGTTATTAAGCTTTTTATTTGACTGGAATGGAATAACTCTATTGGGTTGTCTTGTCCAAATGTTTTTTATCCACTTTGTGAGCTCCTTTCAGTCAACTGTTCTCCTAGGGATGGCTTTGGATCGATATGTTGCCATATGTGTCCCACTGCGCTACAATGATTACATAAATATGTCGACTTTCTGTAAATTCTCTGCTGTAGTTCTTctgagaaatatgttttttgttttacttgtagTAGTTCTAGCCAGTCGTCTTTCTTTTTGCTCATCGAATGTTATTGATGATTGCTTTTGTGAGCACATGGCTCTGGTAAGCTTGGCCTGTGGAAACACCACCAAGAACAGTATTATTGGGCTGCTTGGTGTGTTTTCTGTAACAGTCACTGATGCTGTGATCTTTGTGATTTCCTACATCAAAGTTTtctctgatgtttttaaaacacattcaggAAAATCACGTGAAAAAACAATCCACACATGTGGAACTCATTTAATAATCGCAGGTGTGACTTTGACCTTTACCATGACCACACTTCTTGCATACAGGTTCCAAAATTCCCTCCCTCCCAATATTCATAACTTAATCAGTGTAATATACTTACTTTTGCCCACCATTTTACATCCAATTATTTATGGAATAAgaacaaaagcaataaaagaGGAGATGTGGAAACATTTccaatgcaaaataattggacCCATCTCCTTGAAACTATCAATCACTGATATCGTGGTCATTGTAATTTCATATATCAAAATTTtctctgatgtttttaaaacacactcaGGAAACTCCCGACAGAAGGCAAGCCACACATGTGGAACTCAATTAATAGTCACAGGTGTGTCTTACACTTTTGCCATGACAGCCTTTCTTGCATACCGGATCAAGAATTCACTCAACCCCGGTATTCACACCCTAATAAGCATAATATCACAGTGGTATTTAAGCAGAGAGGTTTTAAGCTTTTTATTTGACTGGGATGGAATAACTCTATTGGGAGGTctcatacaaatgttttttatccACTTTGTTAGTAGATTTCAGTCAACTCTACTGCTAGGGATGGCTCTGGATCAGGGTCACAATGGGGACAATTAG

Function

GO:

id name namespace
GO:0050896 response to stimulus biological_process
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17179 lncRNA downstream 291901 21785244 ~ 21785716 (-) True G13861
TU17178 lncRNA downstream 295321 21782064 ~ 21782296 (-) True G13860
TU17121 lncRNA downstream 1169499 20907918 ~ 20908118 (-) True G13819
TU17114 lncRNA downstream 1315924 20761423 ~ 20761693 (-) True G13812
TU17110 lncRNA downstream 1410637 20666142 ~ 20666980 (-) False AMCG00016480
TU17202 lncRNA upstream 56611 22141953 ~ 22142185 (-) True G13884
TU17205 lncRNA upstream 87208 22172550 ~ 22172940 (-) True G13887
TU17211 lncRNA upstream 104574 22189916 ~ 22226828 (-) True G13891
TU17214 lncRNA upstream 150829 22236171 ~ 22236399 (-) True G13893
TU17216 lncRNA upstream 275172 22360514 ~ 22360776 (-) True G13895
AMCG00016487 mRNA downstream 56886 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016488 mRNA downstream 125424 21949268 ~ 21952193 (-) True AMCG00016488
AMCG00016486 mRNA downstream 155978 21910870 ~ 21921639 (-) True AMCG00016486
AMCG00016485 mRNA downstream 367928 21688811 ~ 21709689 (-) True AMCG00016485
AMCG00016484 mRNA downstream 832199 21074094 ~ 21245418 (-) True AMCG00016484
AMCG00016504 mRNA upstream 1755720 23841062 ~ 23862739 (-) True AMCG00016504
AMCG00016505 mRNA upstream 1779239 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016512 mRNA upstream 1808081 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016510 mRNA upstream 1831601 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016514 mRNA upstream 1842549 23927891 ~ 23931580 (-) True AMCG00016514
TU16905 other downstream 1942070 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 2972236 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 5216438 16858541 ~ 16861179 (-) True G12945
TU17287 other upstream 1369750 23455092 ~ 23455811 (-) True G13962
TU17295 other upstream 1613807 23699149 ~ 23700255 (-) True G13969
TU17551 other upstream 2225695 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 2225695 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 2795806 24881148 ~ 24882098 (-) True G14305

Expression Profile