RNA id: AMCG00016499


Basic Information

Item Value
RNA id AMCG00016499
length 336
RNA type mRNA
GC content 0.49
exon number 2
gene id AMCG00016499
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 22978894 ~ 22984657 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTACAGGGCGAGAGTGACCCGCAAGAGGGCTTCATCAAAGTGTTCCCATTCACTGGGCAAGAGCTTTTACCTCCTGAGAGTAAATGTCTGATAATGCTGGTCAACTTCATCACCGCCATTCTCTTTGATGACATGTACAGTCGATTCGGTGTGAGGGGAATGTCCCAGACTCTGCACAATGTCATGTTGGGGGAATTTCTAGTCATCCCTTCTCTGTTCAATCCCATTGTATATGGCCAGAAGCAGCACCATGTGCGGAGCAGGGTGTTGAGGACGTTGTACAAACACAAAGTGACTCGGAGCCATGGACCAAACTGGGTTGGAGGAGAAGGGAAA

Function

GO:

id name namespace
GO:0050896 response to stimulus biological_process
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17250 lncRNA upstream 63838 22914796 ~ 22915056 (+) True G13928
TU17223 lncRNA upstream 500297 22478336 ~ 22478597 (+) True G13902
TU17215 lncRNA upstream 648595 22330063 ~ 22330299 (+) True G13894
TU17213 lncRNA upstream 742495 22236171 ~ 22236399 (+) True G13892
TU17191 lncRNA upstream 1056433 21922153 ~ 21922461 (+) True G13873
TU17262 lncRNA downstream 25460 23010117 ~ 23010500 (+) True G13938
TU17263 lncRNA downstream 25989 23010646 ~ 23010869 (+) True G13939
TU17267 lncRNA downstream 127269 23111926 ~ 23112165 (+) True G13943
TU17273 lncRNA downstream 340903 23325560 ~ 23325760 (+) True G13949
TU17277 lncRNA downstream 362770 23347427 ~ 23347712 (+) True G13953
AMCG00016498 mRNA upstream 311572 22656660 ~ 22667322 (+) True AMCG00016498
AMCG00016496 mRNA upstream 651871 22326799 ~ 22327023 (+) True AMCG00016496
AMCG00016494 mRNA upstream 821624 22146673 ~ 22157270 (+) True AMCG00016494
AMCG00016491 mRNA upstream 922665 22045365 ~ 22056229 (+) True AMCG00016491
AMCG00016492 mRNA upstream 987471 21990406 ~ 21991423 (+) True AMCG00016492
AMCG00016501 mRNA downstream 668737 23653394 ~ 23716846 (+) True AMCG00016501
AMCG00016500 mRNA downstream 744191 23728848 ~ 23751132 (+) True AMCG00016500
AMCG00016503 mRNA downstream 783479 23768136 ~ 23815510 (+) True AMCG00016503
AMCG00016502 mRNA downstream 881610 23866267 ~ 23881166 (+) False AMCG00016502
AMCG00016509 mRNA downstream 919347 23904004 ~ 23913433 (+) True AMCG00016509
TU16114 other upstream 5856962 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 6492891 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 6492891 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 6493746 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 8540288 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 1095360 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 1550361 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 2023305 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 2148541 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 2165826 25150483 ~ 25157461 (+) False AMCG00016566