RNA id: TU17326


Basic Information

Item Value
RNA id TU17326
length 1987
lncRNA type sense_over
GC content 0.40
exon number 1
gene id AMCG00016502
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23866267 ~ 23882946 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCACAGAGAAGAGGTTTGAGAGCGAGTCCTTCTCAGAGAGTGAGGATGATTTGAAGTCCAGCAAGCAGCCCCCCAAGCAGCTCGCCTGCCTGAAGCCAGCCACAGGcaagaaagaggaggagaagaagagcCAAAAGAAGTCTGCCGCTGCCAGCAACAAAGTGATCAAGCAGGTGTCCATCATGGGATTCTTCCAGAAGAAGTAGCTGGGGGAAATGCCAAATCCTCACCTGTTACCTCTGTGAACAAGCATTGAACTAATGGTGACTTGGCTCCATTTCTTCCTCGGCTGGACCCTCCTACAAGGGTCTCTCCTAGAACATTTACACAGCTGTGGTGTTTGACGGTGGATGTAACCGTTTGAGCTGGCATACCCTTTGTTCATGGAAAGGACAAATCCTGATGTGTGGTGAAGATGCACTGAGGCTCCGATGGGATACTTGTCTGtcctgtgtattttgtgtttattctgtgctCTCCCCCAAGCGGTTCCCAATTAACTTCttatttgggatttttttttttttggcaaattgtaaaggtgtttgtttatttttggtgaaACTACACAGATAGGGAACAGCAGCACTTCTTGTTTTGCATAATGTTGGCCTGCACTCTTGATGTGAACACACATATTAAATCAGTTATGAGTTTTGTGATATATTAAGTGAACTTCTTTCAAAGAGCAAGTGGAATTGTGCAAATAGTCTAAGTTCAGAGTCTTTGTTTAtccttaaaaaggaaaaatgggATTGTATTCTAATTATAGAAGAATTCTGAAATCGCTCAGCTAAACTAAATTTGAACTGGGACCCTTATTTGGATTTTGAACTGCGTATAGACTTAGGTGGCATTGCTAAATAGTGTATGCAAATTGCccatttttcttcattctgcCATAACTTTCAGACAAGTCCCTTGACAATGTTAAGTAGGTGAACGACCCAGTGAACGGGAGATAACATCAAGACCACAAGTTATGGCCTATATCAGAGCACTTGCATCACTCAACCGAGGATGAAACtggtaaaatgtgtttttaactaAAACTGAGTATTTTCAGGTATCCTTTACTGCAGCAAGGCCAATTGTTGATAATGATCCTGTGTAGTGAGACAGGTATCAATTATGAATACCCCCTTACAGTTGTTACTCTGCCAGGAAGAATGTGTTTCCCAAAACATGGTAGtttcccttttaaatgttttgttcagaTAGTGGggactgtgtttttaattagtgaCTTGCTTTgccagtaaaataaattaatcataaacAAATTTAATAAGGCAAATTACTGTATGTGTACTTCTGCTGTCTCCACTAAAAAGAGCCTGGTCTTGTGTTCTTCCATCAAATGACAAGCTGTGAGATCTGGCACATAAAGGGTGTTAAAAGCGAAGcgagaaggaaaaaaagcacattgttttgaagaATAGTTGTAAAGAGCATCACATAAGTCAAATTTGTAACACATTGTAAGCAGACCATTTTGATTGCCCAAACCCCCTCTTGCCTCTGCTGTGagaatctgttttttgtttgtggatGGGAGCGTGGGTTTGAGGAGGTGTGGACAGATTCTGTGATTTGTATGTCAATTACGTGTTtgaagtttacattttttttttttgtattgtgtatatatatgtgagtTAAAGACTGCCAGCATGGAAGTCCACGGAGCTCTTTCCACTCTTTACAGGAATAAATTGCGGTGATGTTTTTGGTTTGGGgtggttttctttgtttcccaGCAGGACTTTCTAATCAAGGTCTTAAGGTACCTACTTTTATGAGGAGTGGTTGGAAATGATTCCAGTCTTATTAGGGGGTGGCGGGTGCAGTACTGTTTGCATTATGGATTTACCAGAATTCTCAGAGAATTCTCTTCTCCAACGCTTCCAAATACAGCTGTGACTTCTcgcttcccttttttttttttcttttatagctcaaaatgtgagaaataaaataaatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17308 lncRNA upstream 15160 23862215 ~ 23865800 (+) True G13979
TU17309 lncRNA upstream 15160 23862215 ~ 23865800 (+) False G13979
TU17277 lncRNA upstream 533248 23347427 ~ 23347712 (+) True G13953
TU17273 lncRNA upstream 555200 23325560 ~ 23325760 (+) True G13949
TU17267 lncRNA upstream 768795 23111926 ~ 23112165 (+) True G13943
TU17335 lncRNA downstream 60328 23943274 ~ 23944762 (+) False AMCG00016506
TU17414 lncRNA downstream 197071 24080017 ~ 24103017 (+) True G14057
TU17505 lncRNA downstream 434854 24317800 ~ 24321319 (+) True G14132
TU17511 lncRNA downstream 454024 24336970 ~ 24338848 (+) True G14136
TU17494 lncRNA downstream 487380 24370326 ~ 24375827 (+) True G14127
AMCG00016503 mRNA upstream 65450 23768136 ~ 23815510 (+) True AMCG00016503
AMCG00016500 mRNA upstream 129828 23728848 ~ 23751132 (+) True AMCG00016500
AMCG00016501 mRNA upstream 164114 23653394 ~ 23716846 (+) True AMCG00016501
AMCG00016499 mRNA upstream 896303 22978894 ~ 22984657 (+) True AMCG00016499
AMCG00016498 mRNA upstream 1213638 22656660 ~ 22667322 (+) True AMCG00016498
AMCG00016509 mRNA downstream 21058 23904004 ~ 23913433 (+) True AMCG00016509
AMCG00016507 mRNA downstream 42845 23925791 ~ 23934450 (+) True AMCG00016507
AMCG00016506 mRNA downstream 55105 23938051 ~ 23945024 (+) True AMCG00016506
AMCG00016508 mRNA downstream 76358 23959304 ~ 23972841 (+) True AMCG00016508
AMCG00016516 mRNA downstream 139468 24022414 ~ 24029956 (+) True AMCG00016516
TU16114 other upstream 6759028 17116793 ~ 17121932 (+) True G13012
TU15937 other upstream 7394957 16484355 ~ 16486003 (+) True AMCG00016329
TU15942 other upstream 7394957 16484355 ~ 16486003 (+) False AMCG00016329
TU15938 other upstream 7395812 16484355 ~ 16485148 (+) False AMCG00016329
TU15538 other upstream 9442354 14437771 ~ 14438606 (+) True G12587
TU17415 other downstream 197071 24080017 ~ 24110182 (+) False G14057
TU17581 other downstream 652072 24535018 ~ 24561807 (+) False AMCG00016537
TU17758 other downstream 1125016 25007962 ~ 25010687 (+) True G14326
TU17806 other downstream 1250252 25133198 ~ 25133879 (+) True G14361
TU17809 other downstream 1267537 25150483 ~ 25157461 (+) False AMCG00016566

Expression Profile