RNA id: TU17307


Basic Information

Item Value
RNA id TU17307
length 3160
lncRNA type sense_over
GC content 0.46
exon number 1
gene id AMCG00016504
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 23841062 ~ 23862739 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAATGAGAATGAAGAATCCCAGTGTATTCTCATGCCTAGACAGCAGTCAAGCCTATTTCTAATTAAGGGCAGGACAGCTCTCTCTACTATATAATCCCTGCAAGCAGGTTGTGCGGTCAATAGTGctattaacacaaaaaaaataggCCCAGGCAGGTTACATTTGAATTCGTCATTCCTGAGTCTTGCCGCcttgttgtgtgttttacctaattgaaaacaaaactaaccatGTTTTAGacaacagaaatgaaaactgCAGCAGTGTGTAGACACTCATGGTTTAACAAGGGCCTCAGTCCTTATGAAAATACTAATACAATGCTCAATACACACGACTGAATTAAGTTTACAATCTGACACTCCAAACCAAAAAAGGAGAGGCGgatggagaggagagggagaggctaCTGCATTCATTTTGCTACATATGTCCTGCCAATACTTGTATAAGCCTTGAGGCCAGGGCTGTGCATTAAACATACACCTTTGTTCTGAATGAAAACAGTACAGCATTAACATGTACAGTGCAAACAGAAGATAGCTATACCTGACAGGTGATTCAGGATACCTTGTGTACCAATGTCTCCGGTCAAAGATTAAACGCTGCCTTTTTTGTAGGATTACTACTTTGACAGCAGGTTTCACAGACCCTGATCAATATTTGTCTATGGATTTCCCTACCTAAAATACTCTGGCTAGACCTGGACTGGTGCTGTTCTTGTTCTGTGAAACCGGCCctgtatgtaatttgtaatgtaagGATGCGTGCGAGGCATTGTGGATATTCCAGAAATGATAGTTCCTGTTGCAGAGCTAGGGATCGAGGGGAAAATGCTGGAGTGGGAAGTTCTATGTGTTCTTTTCCTTTACATTGCCTTCTGCAGTCCCAGATTTACATGCTGTGAATATTTTGTCGCAATCCGAAGTCTACACATTTGTACATTCTGGAAGGTAGGGGCTGGGAATATGCACTTCcaaatagaaatgtaaagaCTAGTTTATTGGGTCTGTCTCTGTTGCCAAGTGCCCTCCCACATGTTAGACATGAGATGAAATTTTGAAACTGATACTGTGTTCATCACGTTAAAGTAGATGTagcctatatttaaaatatttttgaattatatttttggtaGACAATGAAgagataatatacattttaaaattaatatactgGTACTTGTGTCATACCATAGTAACTGtaagcacttttttttcctgaactaaatttaatttattttctttgttcactAACTTCAAagatatgttatttttttttacctttgtgCTATTACATCCTGCTAAATAACCTCATGATTGTCAACAACTTCAAAGGTTTTACCCCAGCATTGGGCGTGTTGAATTCTGTTCTTCCTGCATTGAGAATTCTACAGCAGGTTCTCTTACCAAATCAAATtaagaaggaaggaaagaaagaaagaaaaatctgttttgaaTAAAGAATTTCAGTAGTCCTTAACATACATTGGTGAATGCTCTTCCTGAGAGatgtatgaatttaaatgaaatctcAATTCAGTCCAATGTCAATTCACCACTAAGATTTGTTGTTTGAGCAGTCCCTGCCTGCTGTGTGAATGGAGTTGTGCAGGCAGCACGTCTCCTGCTCTGGACTTTTATGTTGGGGGAAGTGAGTTCCTTCCCAACTATAAAGCCCTCTTGGGTACATGGGGGgtgaaataattattcaataGAAGGGTGTAATAATGAGTTTTGGAGCTGCTGTAATCGTGATATTTGAGCTGAGGTTTGTAATGGACTTTGAGCAAAATTCCACAGAGGGTAGAATTTAGTAACATCTCTGTTAATGTGAAATCTCTTGTCCTGTTACCTCATCTCTGgctttttataaaatgcatatgtattttattgttattactgtttaaaaacatattttagtggTGTGCATATGTAAGGTTTCTTGAAATTGTGTACAGAGCTGTTGATGTACAGTGGAGTGCTTTCTGTGCTCTGGTTTTCAGTTTACTTTGTTGTATGctgcttttgtgtgtgcttcaactgctttttttaattgtgccaCGGTTGACTCAGTGATTTGTTCCTCTGTTAATCTGTTGGTTCTTGTACCCAAACTTGTGTTATGCATAAGTATTGAGTTTGATAAAGATTGCTGACAGGCTTCTGACCCTCGCAGGTCAAGGAAAACTCCACAGTTGTTTCCTGTAGCGAGtaagtttgtttaaatatatatattttagtttaaaatcatCGAGAGCTACCTTGTGTGAAGTTGACAGGTcgaatgcatttaaaaatgagatAATGGAAAGCGAACTTTGAGTTGAATTTACTTTTTGTAGTTGTGTGACAAAATCCAAAAAACACCTACTGATAGTCAAGATCTACATCCTCTTTTGTCATGAAACATATTTCACTGATTGTACACCTAGGAAATAGTACAgtgtattaatatgttttgtatatctAGCCAGTGAAACCatttttcaagaaatatattttcacatctACAATGTTCCACATGGTtacaaaaaatgtgatgtatatTATTGTCTTATTGattacaaattgaaatgaaGAACATAGGGACAGCATACAGAAAGGTATTTTGATATATACATCTTGTTATAAGCTAAACACAGGAACAGATGTCTTTCAGTTTTATGACTCTAAAGCATCTATTTTGCCACAAGTGTAAATGGCTCCTTGCCGATGGGAGTCAGCACAACACGGCCACCACAGCCAACAGATCACATACTGAAAGAAAGAcaagtaaaatatgaaattgtgtttataataaaaatgtaaggtCATCTTCTACAACACAGCACAATTTATTCAAGAGCTTTCTCTGGCCTTAAGGGACTGAACAGCTTGTTTACATGTAAATCTGTTCCTGATTTGCACTAAGCTCTGGAGGAATAAAGTGAATGTAGCCCCgtgctatgtgtgtgtgtgcacagccTATATAGATGGACACCACCAGCACAGACACATCCATGTGAGGCAcattataaaaaagtaatttaatttctttgtcagagaCTTTGcacttttttcttatatttatttgaatgtatatatgTTGATTTGctgcattaatatattttcaatgctGATGTTTCAACATAATAAAACACCCCTTTCTCCTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17281 lncRNA downstream 482248 23358371 ~ 23358814 (-) True G13957
TU17280 lncRNA downstream 483370 23357461 ~ 23357692 (-) True G13956
TU17278 lncRNA downstream 493350 23347440 ~ 23347712 (-) True G13954
TU17276 lncRNA downstream 493711 23347006 ~ 23347351 (-) True G13952
TU17266 lncRNA downstream 747226 23092287 ~ 23093836 (-) True G13942
TU17321 lncRNA upstream 30293 23874514 ~ 23875167 (-) True AMCG00016505
TU17328 lncRNA upstream 36738 23880959 ~ 23882959 (-) True G13990
TU17356 lncRNA upstream 88788 23933009 ~ 23933843 (-) True G14012
TU17358 lncRNA upstream 89945 23934166 ~ 23934467 (-) True G14013
TU17360 lncRNA upstream 97097 23941318 ~ 23941538 (-) True G14015
AMCG00016497 mRNA downstream 1755720 22077617 ~ 22085342 (-) True AMCG00016497
AMCG00016487 mRNA downstream 1820331 22017124 ~ 22020731 (-) True AMCG00016487
AMCG00016488 mRNA downstream 1888869 21949268 ~ 21952193 (-) True AMCG00016488
AMCG00016486 mRNA downstream 1919423 21910870 ~ 21921639 (-) True AMCG00016486
AMCG00016485 mRNA downstream 2131373 21688811 ~ 21709689 (-) True AMCG00016485
AMCG00016505 mRNA upstream 20360 23864581 ~ 23885258 (-) False AMCG00016505
AMCG00016512 mRNA upstream 49202 23893423 ~ 23902805 (-) True AMCG00016512
AMCG00016510 mRNA upstream 72722 23916943 ~ 23925716 (-) True AMCG00016510
AMCG00016514 mRNA upstream 83670 23927891 ~ 23931580 (-) True AMCG00016514
AMCG00016513 mRNA upstream 90682 23934903 ~ 23937234 (-) True AMCG00016513
TU17295 other downstream 140807 23699149 ~ 23700255 (-) True G13969
TU17287 other downstream 385251 23455092 ~ 23455811 (-) True G13962
TU16905 other downstream 3705515 20135197 ~ 20135547 (-) False AMCG00016453
TU16556 other downstream 4735681 19091239 ~ 19105381 (-) True G13367
TU16024 other downstream 6979883 16858541 ~ 16861179 (-) True G12945
TU17551 other upstream 466816 24311037 ~ 24316802 (-) False AMCG00016531
TU17553 other upstream 466816 24311037 ~ 24316802 (-) False AMCG00016531
TU17725 other upstream 1036927 24881148 ~ 24882098 (-) True G14305
TU17766 other upstream 1167120 25011341 ~ 25011778 (-) False AMCG00016562
TU17768 other upstream 1168143 25012364 ~ 25015343 (-) False AMCG00016562

Expression Profile